BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0090.p
         (77 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310894|ref|YP_003774986.1| dipeptide/oligopeptide/nickel A...   151   1e-38
gi|300312479|ref|YP_003776571.1| dipeptide/oligopeptide/nickel A...    74   3e-15
gi|300311171|ref|YP_003775263.1| dipeptide/oligopeptide/nickel A...    53   5e-09

>gi|300310894|ref|YP_003774986.1| dipeptide/oligopeptide/nickel ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  151 bits (381), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 76/77 (98%)

Query: 1   LQIARAITLEATLSFLGLGVPITEPSLGLLISNGYQYMLSGEYWISFYPGIALLVVIVAI 60
           LQ+ARAITLEATLSFLGLGVPITEPSLGLLISNGYQYMLSGEYWISFYPGI LLVVIVAI
Sbjct: 244 LQVARAITLEATLSFLGLGVPITEPSLGLLISNGYQYMLSGEYWISFYPGITLLVVIVAI 303

Query: 61  NLVGDRLRDVMNPRWQK 77
           NLVGDRLRD++NPRWQK
Sbjct: 304 NLVGDRLRDILNPRWQK 320


>gi|300312479|ref|YP_003776571.1| dipeptide/oligopeptide/nickel ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score = 73.6 bits (179), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 1/73 (1%)

Query: 1   LQIARAITLEATLSFLGLGVPITEPSLGLLISNGYQYMLSGEYWISFYPGIALLVVIVAI 60
           L++A AI LEATLSFLGLGV    PS GL+++ G  YM   + W+   PG+AL ++++AI
Sbjct: 230 LEMAHAILLEATLSFLGLGVQPPTPSWGLMVAEGKTYMFF-KPWVIVIPGVALALLVLAI 288

Query: 61  NLVGDRLRDVMNP 73
           NLVGD LRDV  P
Sbjct: 289 NLVGDGLRDVNAP 301


>gi|300311171|ref|YP_003775263.1| dipeptide/oligopeptide/nickel ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 310

 Score = 52.8 bits (125), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1   LQIARAITLEATLSFLGLGVPITEPSLGLLISNGYQYMLSGEYWISFYPGIALLVVIVAI 60
           ++I  +I   A LSFLGLG     P  GL+++     M++  + ++  P IA+ + ++A 
Sbjct: 234 MRIGTSIITAAGLSFLGLGAQSPTPEWGLMLNEARADMVTSPH-VALVPSIAIFLTVLAF 292

Query: 61  NLVGDRLRDVMNPR 74
           NL+GD LRD ++P+
Sbjct: 293 NLLGDGLRDALDPK 306


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.144    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 222,751
Number of extensions: 6795
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 3
Length of query: 77
Length of database: 1,619,870
Length adjustment: 48
Effective length of query: 29
Effective length of database: 1,392,590
Effective search space: 40385110
Effective search space used: 40385110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 123 (52.0 bits)