BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0087.p
         (150 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310892|ref|YP_003774984.1| transmembrane oxidoreductase [H...   214   3e-57

>gi|300310892|ref|YP_003774984.1| transmembrane oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 496

 Score =  214 bits (544), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 100/137 (72%), Positives = 112/137 (81%)

Query: 2   FELDFLIFSTGFRVDWTVRPEFAVIAPHIRSWRARYMPPPGEEDAELSDSPDLGRAFEFQ 61
            ELDFL FSTGF++DW++R EF  IAPHI +W  RY PP GEED EL+DSP LG  FEFQ
Sbjct: 354 LELDFLFFSTGFKIDWSLRREFRDIAPHILNWSDRYTPPAGEEDQELADSPYLGPVFEFQ 413

Query: 62  QKQPGGLPGLERIHCFCYPATITHGTLSGDIPAISDGAQRLAQGIASLLYGEDVETHYRN 121
           QK PG LPGLER+HCFCYPA  +HGT+SGDIPAISDGA RLAQGIA+L+Y EDVE HYRN
Sbjct: 414 QKTPGSLPGLERVHCFCYPAAASHGTVSGDIPAISDGAYRLAQGIAALMYSEDVEYHYRN 473

Query: 122 LQDYAEPELVGDEWTPS 138
           +Q Y EPEL GDEWT S
Sbjct: 474 IQAYEEPELEGDEWTES 490


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 562,874
Number of extensions: 24112
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 73
Effective length of database: 1,255,275
Effective search space: 91635075
Effective search space used: 91635075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)