BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0086.p
         (308 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310892|ref|YP_003774984.1| transmembrane oxidoreductase [H...   442   e-125

>gi|300310892|ref|YP_003774984.1| transmembrane oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 496

 Score =  442 bits (1138), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/312 (70%), Positives = 248/312 (79%), Gaps = 14/312 (4%)

Query: 11  GLAALEARLRQDLAWLELPAKSWVPQKTVDNQPVLDVAVIGGGQAGMAAAVSLLHLGVNA 70
           GLAALEARLRQDL WL LP KSW PQ   +  PVLDVA+IGGGQAGMAA+V+L HLG+  
Sbjct: 22  GLAALEARLRQDLQWLALPGKSWTPQIEREGVPVLDVAIIGGGQAGMAASVALSHLGIPN 81

Query: 71  VIYDQSPAGFEGPWATTARMETLRSPKKLTGPALGFAALTFRAWFEAQFGLDAWEALDKI 130
           VIYDQSP  FEGPWATTARMETLRSPK LTGPALGF ALTFRAWFEAQFGL AWEALDKI
Sbjct: 82  VIYDQSPKDFEGPWATTARMETLRSPKTLTGPALGFPALTFRAWFEAQFGLAAWEALDKI 141

Query: 131 PRLQWMDYLRWYRKVMALDVRNDHRMELIRPRADGLVELHIAAPSGKSC----RVPCGRI 186
           PRLQWMDYLRW+R+VM LD+RN+HR+  ++PRADG+V L + +PSG +     RV     
Sbjct: 142 PRLQWMDYLRWFRRVMQLDIRNEHRVLAVQPRADGIVALQLQSPSGAATVLARRVVVATG 201

Query: 187 RS----------ADSLPRALWAHSSDDMDYGKLAGKRVGIIGAGSSAMDSAGTALEAGAE 236
           R           A  LPR  WAHSSD  DY  L GKRVG+IG G+SAMDSA TALE GA 
Sbjct: 202 RDGLGGAYLPPLAGQLPRDRWAHSSDLFDYASLKGKRVGVIGGGASAMDSAATALEEGAA 261

Query: 237 RVDILIRRTELPRINKGKGSGNPGLTSGHLNLPDEWKWRIRHYVNVQQIPPPSGSVQRVS 296
           RVD+LIRR +LPRINKGKGSG+PGL +GHL+LPDEWKWRIRHYVN QQ+PPPSGS +RVS
Sbjct: 262 RVDMLIRRKDLPRINKGKGSGSPGLVNGHLHLPDEWKWRIRHYVNAQQVPPPSGSTRRVS 321

Query: 297 KFSNARFIFSTS 308
           +F+NARF+  T+
Sbjct: 322 RFANARFLLGTA 333


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,048,371
Number of extensions: 47487
Number of successful extensions: 203
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,217,395
Effective search space: 271479085
Effective search space used: 271479085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)