BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0085.p (309 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310891|ref|YP_003774983.1| transcription regulator protein... 489 e-139 gi|300309907|ref|YP_003773999.1| transcription regulator protein... 101 6e-23 gi|300310792|ref|YP_003774884.1| LysR family transcription regul... 78 1e-15 gi|300312961|ref|YP_003777053.1| transcription regulator protein... 64 1e-11 gi|300310987|ref|YP_003775079.1| cys regulon transcription regul... 59 6e-10 >gi|300310891|ref|YP_003774983.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 489 bits (1259), Expect = e-139, Method: Compositional matrix adjust. Identities = 248/312 (79%), Positives = 278/312 (89%), Gaps = 3/312 (0%) Query: 1 MDLNQLEAFSAVMTIGSVTGAGRSLGRSQPAVSKALQDLESELGYALFDRNGPRVTPTDK 60 MDLNQLEAF+AVMT+GSVTGAGRSLGRSQPAVSKA+ DLESELGYALFDRNGPRVTPT K Sbjct: 1 MDLNQLEAFAAVMTLGSVTGAGRSLGRSQPAVSKAIGDLESELGYALFDRNGPRVTPTAK 60 Query: 61 AFLLYEEVERSLVGLRTIRERALEIGREELQPIHLVATPALASTIAPAALKMIEKNG--- 117 AFLLYEEVERSLVGLR+IRERALEI REE+ P+HLVATPALASTIAPAAL+++ +G Sbjct: 61 AFLLYEEVERSLVGLRSIRERALEIAREEVHPVHLVATPALASTIAPAALQLLAADGQHA 120 Query: 118 LPEHIHLRSASAEQVVHSVLHRTVSLGLTSLPVAHRGLDLHWIGQAPCVAVLRADSPLAR 177 PEH+HLRSASAEQVVH+VLHRTVSLGLTSLPVAHRGLDLHWIG+APCVAV+RAD PLA Sbjct: 121 FPEHVHLRSASAEQVVHAVLHRTVSLGLTSLPVAHRGLDLHWIGEAPCVAVVRADHPLAS 180 Query: 178 LDVVTVDALRGERVITMSNRYRLRQRIDMALAQDKPLDVAIETNTSFNAVMAAHAGLGVA 237 D +T ALRG+RVITMSNRYRLRQR+++AL +D LDVAI+TNTSFNA+MAA AGLGVA Sbjct: 181 KDKLTRAALRGQRVITMSNRYRLRQRVELALGEDSQLDVAIDTNTSFNAIMAARAGLGVA 240 Query: 238 LVEPMTALGMPIEGLAVRPLAVNIPFYFGVVTPFGKPVDAVTQALIAAIETAARNILHGF 297 LVEP TA GMPIEG+ V+ LAV IPFYFGVVTP+GKPV+ VT+ LI A+E AAR L GF Sbjct: 241 LVEPATAYGMPIEGMVVKRLAVEIPFYFGVVTPYGKPVEGVTERLIDAVEQAARTTLQGF 300 Query: 298 VRRDAGDHDDLL 309 V+RDA HD+LL Sbjct: 301 VKRDASLHDELL 312 >gi|300309907|ref|YP_003773999.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 295 Score = 101 bits (252), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 122/247 (49%), Gaps = 3/247 (1%) Query: 1 MDLNQLEAFSAVMTIGSVTGAGRSLGRSQPAVSKALQDLESELGYALFDRNGPRVTPTDK 60 M L +E FSA+M GS GA R L +QPA+SK L+ E +G+ALF R+G ++ PT + Sbjct: 1 MRLRHIEIFSAIMQTGSAIGAARLLNVTQPAISKMLRHAEQTVGFALFLRSGGKLVPTPE 60 Query: 61 AFLLYEEVERSLVGLRTIRERALEIGREELQPIHLVATPALASTIAPAALKMIEKNGLPE 120 A L +E++ L IR + P+ + ATPA+A +AP A+ + + Sbjct: 61 ALRLQQELQPFDEQLARIRRVVSNLASGSEAPLRIAATPAIAHHLAPKAVALWCQAHPDS 120 Query: 121 HIHLRSASAEQVVHSVLHRTVSLGLTSLPVAHRGLDLHWIGQAPCVAVLRAD-SPLARLD 179 L ++ ++++S+L V + LT P++H L + A+ A P RLD Sbjct: 121 ECLLSASHTRELLYSLLLNEVDIALTMQPISHPNLITTVVCDCDIYAIAPAQWWPQERLD 180 Query: 180 V-VTVDALRGERVITMSNRYRLRQRIDMALAQ-DKPLDVAIETNTSFNAVMAAHAGLGVA 237 +T D + G+ I++ R L + LA P DV + T A A +G+A Sbjct: 181 TPITPDEIAGQPFISIDIRSHLGASVSAWLAGVSPPPDVKVTVQTYTLARSLVEARIGIA 240 Query: 238 LVEPMTA 244 +V+ TA Sbjct: 241 VVDHFTA 247 >gi|300310792|ref|YP_003774884.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 82/299 (27%), Positives = 145/299 (48%), Gaps = 16/299 (5%) Query: 1 MDLNQLEAFSAVMTIGSVTGAGRSLGRSQPAVSKALQDLESELGYALFDRNGPRV--TPT 58 ++ +L+AF AV S A L +QPA+S+ +++LE L LFDR RV TP Sbjct: 5 IETAELQAFIAVARQSSFRAAAEGLFITQPALSRRIENLEQALQERLFDRTTRRVSLTPA 64 Query: 59 DKAFLLYEE--VERSLVGLRTIRERALEIGREELQPIHLVATPALASTIAPAALKMIEKN 116 + FL++ + +E + ++++ +R + RE + + P++A+ + P LK ++ Sbjct: 65 GELFLVHAQAVMEELELAVKSVEQRMAQ-RREH---VTVACVPSVANNLLPQVLKRYARS 120 Query: 117 GLPEHIHLRSASAEQVVHSVLHRTVSLGLTSLPVAHRGLDLHWIGQAPCVAVLRADSPLA 176 + + SA V+ SV G+ + +D + + +AV+ PLA Sbjct: 121 HANVRVRIIDESAADVLESVRKGEADFGVNFIGAQEAEIDFAELTRERYLAVMPTHHPLA 180 Query: 177 RLDVVTVDALRGERVITMSNRYRLRQRIDMALAQ--DKPLDVAIETNTSFNAVMAAHAGL 234 + +L GE+++++S+ R ID A ++ +P+ + ETN A+ AGL Sbjct: 181 AHASLNWKSLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPV-IQYETNHVAGAISLVAAGL 239 Query: 235 GVALVEPMTALGMPIEGLAVRPLAVNI-PFYFGVVTPFG---KPVDA-VTQALIAAIET 288 GVAL+ + P +G+ RP+ + G++T G KP A + QAL AI T Sbjct: 240 GVALLPELAIRNAPYKGIVARPVTSPVLSRAMGLITLKGRVLKPAAATLAQALRDAIST 298 >gi|300312961|ref|YP_003777053.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 111/262 (42%), Gaps = 6/262 (2%) Query: 1 MDLNQLEAFSAVMTIGSVTGAGRSLGRSQPAVSKALQDLESELGYALFDRNGPRVTPTDK 60 M+L L+ F+AV + S + A L +QP +S+ ++ LE LG L DR + T Sbjct: 1 MELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA 60 Query: 61 AFLLYEEVERSLVGLRTIRERALEIGREELQPIHLVATPALASTIAPAALKMIEKNGLPE 120 YE+ + L L I E I R ++ P+ + P +K + +PE Sbjct: 61 GKFFYEQTLQVLSRLEQIEEGTRVIARGRQHWFNIGFVPSALYGLLPEMIKRF-RTEMPE 119 Query: 121 -HIHLRSASAEQVVHSVLHRTVSLGLTSLPVAHRGLDLHWIGQAPCVAVLRADSPLARLD 179 I + V ++ + +G LP++ + I + P VAV PL + Sbjct: 120 IEIGFSEIVTMEQVEALKSGRIDVGFGRLPISDPDIVCETIVEEPLVAVFPLGHPLLARN 179 Query: 180 VVTVDALRGERVITMSNRYR---LRQRIDMALAQDKPLDVAIETNTSFNAVMAAHAGLGV 236 VT+ L +R I R R Q +D+ ++ + E N A+ AG+GV Sbjct: 180 KVTLAQLAAQRFILYPARPRPSYADQVLDIFSSRALRPSIVKEANEMQTAIGLVAAGVGV 239 Query: 237 ALVEPMTALGMPIEGLAVRPLA 258 LV P + G+ + RPL+ Sbjct: 240 TLV-PRSVQGLHRSDVVYRPLS 260 >gi|300310987|ref|YP_003775079.1| cys regulon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 58.5 bits (140), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 67/253 (26%), Positives = 111/253 (43%), Gaps = 18/253 (7%) Query: 1 MDLNQLEAFSAVMTIG-SVTGAGRSLGRSQPAVSKALQDLESELGYALFDRNGPRVTP-T 58 M+ QL + G ++T L SQP VS+ +++LE ELG +F+RNG R+T T Sbjct: 1 MNFQQLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLT 60 Query: 59 DKAFLLYEEVERSLVGLRTIRERALEIGREELQPIHLVATPALASTIAPAALKMIEKNGL 118 + + VER L+ +R + E E+ + + T A + P ++ ++ Sbjct: 61 EPGKGILGIVERLLLEAENLRRASKEYAGEQSGTLSIATTHTQARYVLPRVVQAF-RDAF 119 Query: 119 PE-HIHLRSASAEQVVHSVLHRTVSLGLTSLPVAHRGL-DLHWIGQAPC-----VAVLRA 171 P+ I L+ ++ E + V+ +G +A GL + PC V V+ Sbjct: 120 PQVRIALQQSAPEHIAEWVISGKADIG-----IATEGLSQFKELVSFPCYTWSHVIVVPK 174 Query: 172 DSPLARLDVVTVDALRGERVITMSNRYRLRQRIDMALAQD--KPLDVAIETNTSFNAVMA 229 PL L+ V+++ L +IT + R ID A Q +P D+ + S Sbjct: 175 GHPLLGLEQVSLEDLGTWPLITYDVGFTGRGHIDEAFRQAGIEP-DIVLTAMDSDVIQQY 233 Query: 230 AHAGLGVALVEPM 242 G+GV LV M Sbjct: 234 VSLGMGVGLVASM 246 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 984,487 Number of extensions: 43078 Number of successful extensions: 248 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 252 Number of HSP's successfully gapped: 13 Length of query: 309 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 224 Effective length of database: 1,217,395 Effective search space: 272696480 Effective search space used: 272696480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)