BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0081.p
         (410 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313831|ref|YP_003777923.1| sugar ABC transporter periplasm...   597   e-172
gi|300309614|ref|YP_003773706.1| sugar ABC transporter periplasm...    57   2e-09

>gi|300313831|ref|YP_003777923.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 446

 Score =  597 bits (1538), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 276/392 (70%), Positives = 330/392 (84%), Gaps = 1/392 (0%)

Query: 15  SLQVLHWWTSSGERKAVDVLSSKLAEQNIQWRDFAIPGGAGIGAGKVLKSMVLAGHAPEV 74
           SLQVLHWWTS+ ER+A++V+ ++LA+Q+IQWRD AIPGGAG+GA KVLKSMVLA  APEV
Sbjct: 53  SLQVLHWWTSASERQAINVVVNQLAKQDIQWRDVAIPGGAGMGAAKVLKSMVLANRAPEV 112

Query: 75  TQLNGVIFGEWADLGLLLELDNVAAQGNWQKLLFPTVWSLLNNHGHVVAAPLGIHRINNL 134
           TQLNGV+FGEWADLGLLLELDNVA QGNW+K +FPTVWSLLNNHGHVVAAPLGIHRIN+L
Sbjct: 113 TQLNGVVFGEWADLGLLLELDNVAVQGNWEKQMFPTVWSLLNNHGHVVAAPLGIHRINSL 172

Query: 135 YYNVAVFNRLGLSVPRSWEEFDKVAAKLKQAGIVPLAQSGESWQVATLFETLVLSEGGPA 194
           YYNVAVF R  LS P++W+EFD++  KL+ +G+VPLAQS E+WQ+ATLFE L L+E GPA
Sbjct: 173 YYNVAVFKRYNLSPPKTWDEFDQIVKKLQGSGVVPLAQSAEAWQLATLFENLALAESGPA 232

Query: 195 YYRQLFVDLSPRAFADARLLRALKRLRVLKQVMQLPVKERSWTEVARQLVDGEAGMFIMG 254
           YYR+LFV++SP A+ DAR+L  LKRLR L   M  PV+ER WTEVAR +V GEA M IMG
Sbjct: 233 YYRKLFVEMSPAAYLDARMLHILKRLRALAGAMAQPVRERPWTEVARSMVSGEAAMLIMG 292

Query: 255 DWAKGDFNAWGLSADHQFGCAAVPGTADYHLYSIDTLAMFADDYSHQPAQEVLAQIAMSP 314
           DWAKG+ NAWG+  D QFGCA  PGT +YHLYS DTLAMFA +Y+HQP QE LA++ MSP
Sbjct: 293 DWAKGELNAWGMEVDQQFGCAPAPGTGEYHLYSTDTLAMFAGNYAHQPMQETLARLTMSP 352

Query: 315 AVQSDYNKFKGAIPVWRSPDTSKMDGCSQNSWRVFSKGSAYLAPSLVHRMATDETTKDAI 374
           AVQS+YN+ KG+IPV R+ D   MD C+++SWR FSKG  + APSLVHRMATD+TTKDAI
Sbjct: 353 AVQSEYNRIKGSIPVLRAAD-PHMDRCARDSWRTFSKGPMWQAPSLVHRMATDDTTKDAI 411

Query: 375 VAELRRFFVDDQISEAEAQRRLASIARALSRT 406
           VAE++RFF+D  ISE +AQ+RLA+IAR LSR 
Sbjct: 412 VAEVQRFFMDRSISEEQAQKRLATIARTLSRN 443


>gi|300309614|ref|YP_003773706.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 11/203 (5%)

Query: 67  LAGHAPEVTQ-LNGVIFGEWADLGLLLELDNVAAQGNWQKLLFPTVWSLLNNHGHVVAAP 125
           L+  AP++    NG     +A  GLL ++     +  W    + +     + HG   + P
Sbjct: 78  LSTQAPDIINWHNGERMAFYASRGLLEDVSEDWKKNGWD-ATYASTKEASSWHGKQYSVP 136

Query: 126 LGIHRINNLYYNVAVFNRLGLS-VPRSWEEFDKVAAKLKQAGIVPLAQSG-ESWQVATLF 183
             ++    ++Y   +F ++G++  P++W+EF     KLK AGI P+A  G ++W +A  F
Sbjct: 137 T-VYYSWGMFYRKDLFKKVGIAGEPKTWDEFLDACKKLKAAGIAPIAVGGRDAWTLAGWF 195

Query: 184 ETLVLSEGGPAYYRQLFV-DLSPRAFADARLLRALKRLRVLKQVMQLPVKERSWTEVARQ 242
           + L L   G A+++QL   D+   A+ DAR+ +     + L           S+     Q
Sbjct: 196 DYLDLRINGNAFHQQLMAGDI---AYTDARVKKVHTAWKSLIDNKYFIDNALSYDLDGAQ 252

Query: 243 --LVDGEAGMFIMGDWAKGDFNA 263
             L  G+A M +MG +    F A
Sbjct: 253 PFLFQGKAAMMLMGTFIAKGFPA 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,165,888
Number of extensions: 45970
Number of successful extensions: 164
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 2
Length of query: 410
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 323
Effective length of database: 1,207,925
Effective search space: 390159775
Effective search space used: 390159775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)