BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0079.p
         (423 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313832|ref|YP_003777924.1| sugar ABC transporter periplasm...   725   0.0  

>gi|300313832|ref|YP_003777924.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 439

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/404 (83%), Positives = 368/404 (91%), Gaps = 4/404 (0%)

Query: 20  ALAGGNAQAGTLTIESWRVDDLALWENVLIPAFQKKNPGVTVKFSPTAPTEYDSTLTARL 79
           +LA   +QAGTLTIESWRVDDL LW+ VLIPAFQ+ NPG+TVKFSPTAPTEYDS+L AR+
Sbjct: 40  SLAAAPSQAGTLTIESWRVDDLPLWQEVLIPAFQRSNPGITVKFSPTAPTEYDSSLAARM 99

Query: 80  AGGTAGDLVACRPFDVSLSLYNKGHLEKLDGKAGMESFPASAKVAWQSDDGKDTFCMPIA 139
           AGGTAGDLVACRPFDVSLSLYNKGHLEKLDGK GME F  +AK AWQ+DDG+DTFCMP+A
Sbjct: 100 AGGTAGDLVACRPFDVSLSLYNKGHLEKLDGKPGMEFFAPAAKAAWQTDDGRDTFCMPMA 159

Query: 140 SVMHGFLYNQKIFKELNLQPPKTEAEFLKLLETVKAGGKYTPLVLGTADQWEAHQVLFTG 199
           SV+HGF YN KIFKELNL+PPKTEAEF KLL+TVKA GKY PLV+GTA+QWE+HQVLFT 
Sbjct: 160 SVIHGFFYNTKIFKELNLEPPKTEAEFFKLLDTVKANGKYAPLVMGTAEQWESHQVLFTS 219

Query: 200 VGPNYWKGEAGRKALIAGKAKFTDPQFLNVWEYEAKLGKYLSKGASAQTYGDSQNMFALG 259
           +GPNYWKGE GRKALIAGKAKFTDPQF+  W YEAKLGKYL KGASAQTY DSQNMFALG
Sbjct: 220 IGPNYWKGEEGRKALIAGKAKFTDPQFVAAWNYEAKLGKYLPKGASAQTYSDSQNMFALG 279

Query: 260 QGAVYAAGSWDIAYFNANASSKLELGVFPPPVPKAGDACYISDHNDIGMGVNKKSRNKED 319
           +GAVY AGSWDIAYFN     K++   FPPPVPK GDACYISDHNDIGMG+NKKS+NKED
Sbjct: 280 KGAVYPAGSWDIAYFNG----KMDFAAFPPPVPKNGDACYISDHNDIGMGINKKSKNKED 335

Query: 320 AYKFLAWLGSQEFADIYTNKVTGFFSLSNHLISVKDPIAKQMIDWRKSCSSTIRVNSQIL 379
           AYKFLAWLGSQEFAD+YTNKVTGFFSLSNHLISVKDPIAKQM+ WRK+C+STIRVNSQIL
Sbjct: 336 AYKFLAWLGSQEFADLYTNKVTGFFSLSNHLISVKDPIAKQMMGWRKNCASTIRVNSQIL 395

Query: 380 NRGTPSMENEMWNVNAQVLNGKMTPKDAATKIQTGFAKWYKPQQ 423
           NRGTPSMENEMWNVNAQVLNGKMTP+DAA KIQ+GFAKWYKPQQ
Sbjct: 396 NRGTPSMENEMWNVNAQVLNGKMTPQDAAAKIQSGFAKWYKPQQ 439


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,339,943
Number of extensions: 55378
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 335
Effective length of database: 1,203,190
Effective search space: 403068650
Effective search space used: 403068650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)