BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0076.p (366 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 587 e-169 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 395 e-111 gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp... 379 e-106 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 345 3e-96 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 343 1e-95 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 587 bits (1514), Expect = e-169, Method: Compositional matrix adjust. Identities = 288/366 (78%), Positives = 319/366 (87%) Query: 1 LKKSYDGKQNVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEDISGGELAIGGDVV 60 L+K+YDG+ +VLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLE+ISGGELAIGG VV Sbjct: 9 LRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGELAIGGQVV 68 Query: 61 NHLPPAKRGIAMVFQSYALYPHMNVYKNMAFGLKIAGSNKADIDERIRHAAGILKIDHLL 120 NHLPPA+RGIAMVFQSYALYPHMNVYKNMAFGLK+AG++K+DID RIRHAA ILKIDHLL Sbjct: 69 NHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAAILKIDHLL 128 Query: 121 ERLPRELSGGQRQRVAIGRAIVRKPRLFLFDEPLSNLDAALRVQTRLEIAKLHKQLAATI 180 +RLPRELSGGQRQRVAIGRAIVR+PRLFLFDEPLSNLDAALRVQTRLEIAKLH+QLAATI Sbjct: 129 QRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKLHRQLAATI 188 Query: 181 VYVTHDQVEAMTLGDKIVVMHDGHIQQAGTPLELYQHPQNLFVAGFIGSPKMNFLPGLVT 240 VYVTHDQVEAMTLGDKIVVMH+G IQQAGTPLELYQ PQNLFVAGFIGSPKMNF G+VT Sbjct: 189 VYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKMNFFQGVVT 248 Query: 241 AVAEDALEVAVTGGRKVRVDVVPGNAKVGDKLTLGLRAEHIHENSAGSEQFGGKVNLVEH 300 + ++V + GG ++ DV P G +TLGLRAE I E + G VNLVEH Sbjct: 249 RCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREGLGDGQPLHGVVNLVEH 308 Query: 301 LGEANFIYVTLSGGQDIVVRGDGNRNVDIGEEIVLSANSNAFHVFDADGNALRRLKPGNL 360 LGEANF+YVTL GG DIVVRGDGNRNVDIG+ I LS +S+AFH+FDA G ALRR PGNL Sbjct: 309 LGEANFLYVTLDGGHDIVVRGDGNRNVDIGQPIALSVHSHAFHLFDAQGQALRRRTPGNL 368 Query: 361 VSSRQH 366 ++R+H Sbjct: 369 QAARRH 374 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 395 bits (1016), Expect = e-111, Method: Compositional matrix adjust. Identities = 202/367 (55%), Positives = 261/367 (71%), Gaps = 4/367 (1%) Query: 1 LKKSYDGKQNVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEDISGGELAIGGDVV 60 L K YD + V+ +NL+I DGEF V VGPSGCGKSTLLRM+ GLE+IS G+L IG + Sbjct: 9 LAKRYDDNE-VMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDLDIGARRM 67 Query: 61 NHLPPAKRGIAMVFQSYALYPHMNVYKNMAFGLKIAGSNKADIDERIRHAAGILKIDHLL 120 N +P +KRG+AMVFQSYALYPHM++Y NMAFGLKIAG +KA+ID ++HAA IL IDHLL Sbjct: 68 NEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKILHIDHLL 127 Query: 121 ERLPRELSGGQRQRVAIGRAIVRKPRLFLFDEPLSNLDAALRVQTRLEIAKLHKQLAATI 180 +R PR LSGGQRQRVAIGRAI R+P +FLFDEPLSNLDAALRV+ RLE AKLH L T+ Sbjct: 128 DRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLHDDLKTTM 187 Query: 181 VYVTHDQVEAMTLGDKIVVMHDGHIQQAGTPLELYQHPQNLFVAGFIGSPKMNFLPGLVT 240 +YVTHDQ+EAMTL DKIVV+ +G I+Q G+P +LY HP N FVAGFIGSPKMNF+ G V Sbjct: 188 IYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMNFIDGTVA 247 Query: 241 AVAEDALEVAVTGGRKVRVDVVPGNAKVGDKLTLGLRAEHIHENSAGSEQFGGKVNLVEH 300 A+ D ++V + GG V +VG K+TLG+R EH++ + G + +E Sbjct: 248 AIQADGVQVQLPGGGLQWAAVDGSTLQVGQKVTLGVRPEHLN-IAQGQAALQARCTALEL 306 Query: 301 LGEANFIYVTLSGGQD-IVVRGDGNRNVDIGEEIVLSANSNAFHVFDADGNALRRLKPGN 359 LG+ +++Y G +D +++R + + G + L+A+ H+F ADG AL RL + Sbjct: 307 LGDFSYLYAAYEGSEDALILRVPDSLDAPHGSVLPLAADPARCHLFGADGQALPRLA-SS 365 Query: 360 LVSSRQH 366 + + R H Sbjct: 366 VAAPRPH 372 >gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 381 Score = 379 bits (973), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/363 (51%), Positives = 255/363 (70%), Gaps = 8/363 (2%) Query: 2 KKSYDGKQNVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEDISGGELAIGGDVVN 61 +K+Y V+ ++LDI + EFCV +GPSGCGKSTLLR + GLED++ G+L IGG VN Sbjct: 10 QKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGDLFIGGKRVN 69 Query: 62 HLPPAKRGIAMVFQSYALYPHMNVYKNMAFGLKIAGSNKADIDERIRHAAGILKIDHLLE 121 +P A+R +AMVFQSYAL+PHM VY+NM+FGL +A KA+I++++R AA IL+++ LL+ Sbjct: 70 DVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAARILQLEELLQ 129 Query: 122 RLPRELSGGQRQRVAIGRAIVRKPRLFLFDEPLSNLDAALRVQTRLEIAKLHKQL-AATI 180 R P+ELSGGQRQRVAIGRAIVR+P +FLFDEPLSNLDA LR QTR+EIA+LH+Q A++ Sbjct: 130 RKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARLHRQFEQASV 189 Query: 181 VYVTHDQVEAMTLGDKIVVMHD-------GHIQQAGTPLELYQHPQNLFVAGFIGSPKMN 233 VYVTHDQVEAMTL D+IV++H G I Q GTP+ELY HP+N FVAGFIGSP+MN Sbjct: 190 VYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVAGFIGSPRMN 249 Query: 234 FLPGLVTAVAEDALEVAVTGGRKVRVDVVPGNAKVGDKLTLGLRAEHIHENSAGSEQFGG 293 FLP V V E+ + V ++G + + G + G +T+G+R EH+ S G Sbjct: 250 FLPAQVAGVQENGILVRLSGSEETLLVAAQGALQPGQMVTVGVRPEHMEIGSQGQYGIHR 309 Query: 294 KVNLVEHLGEANFIYVTLSGGQDIVVRGDGNRNVDIGEEIVLSANSNAFHVFDADGNALR 353 +V LVE LGE ++++ GQ +V + G+ + GE + ++ ++FD DG AL Sbjct: 310 EVVLVERLGEQTYVHLDEPAGQPLVAKAAGDARITRGERVRVAIAPACAYLFDQDGLALT 369 Query: 354 RLK 356 R + Sbjct: 370 RTQ 372 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 345 bits (886), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 185/351 (52%), Positives = 240/351 (68%), Gaps = 9/351 (2%) Query: 1 LKKSYDGKQNVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEDISGGELAIGGDVV 60 +KK + G ++ G+++DI DGEF VLVGPSGCGKSTLLRML GLE+I+GGE+ IGG VV Sbjct: 9 VKKQF-GSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILIGGTVV 67 Query: 61 NHLPPAKRGIAMVFQSYALYPHMNVYKNMAFGLKIAGSNKADIDERIRHAAGILKIDHLL 120 N++ P R IAMVFQ+YALYPHM V NMAF L +A +KA +DER++ AA IL ++ LL Sbjct: 68 NNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADILGLNQLL 127 Query: 121 ERLPRELSGGQRQRVAIGRAIVRKPRLFLFDEPLSNLDAALRVQTRLEIAKLHKQLAATI 180 +R PR+LSGGQRQRVA+GRAIVR P++FLFDEPLSNLDA LRVQ R EI +LH++L T Sbjct: 128 DRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELHQRLKTTS 187 Query: 181 VYVTHDQVEAMTLGDKIVVMHDGHIQQAGTPLELYQHPQNLFVAGFIGSPKMNFLPGLVT 240 +YVTHDQ+EAMT+ D+IVVM DG ++Q G PL+LY +P NLFVAGFIGSP MNF+P + Sbjct: 188 IYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAMNFIPATLR 247 Query: 241 AVAEDALEVAVTGGRKVRVD---VVPGNAKVGDKLTLGLRAEHIHENSAGSEQFGGKVNL 297 A A EV G +V + GN G K+T G+R EH+ +AG + KV + Sbjct: 248 RNATGA-EVEFADGTRVPAPYGAALQGND--GQKVTYGVRPEHLSIGAAG-QGIATKVIV 303 Query: 298 VEHLGEANFIYVTLSGGQDIVVRGDGNRNVDIGEEIVLSANSNAFHVFDAD 348 VE G ++ G + + G+ I L + + H+FDA+ Sbjct: 304 VEPTGADTEVFSRF-GDTSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDAE 353 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 343 bits (880), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 185/340 (54%), Positives = 230/340 (67%), Gaps = 7/340 (2%) Query: 10 NVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEDISGGELAIGGDVVNHLPPAKRG 69 +V+ G++ +I DGEF V+VGPSGCGKSTLLRM+ GLE+IS G++ IG VVN L P +R Sbjct: 21 DVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEISSGQIVIGDRVVNDLEPKERD 80 Query: 70 IAMVFQSYALYPHMNVYKNMAFGLKIAGSNKADIDERIRHAAGILKIDHLLERLPRELSG 129 IAMVFQ+YALYPHM VY+NMA+GLKI G +K++ID R++ AA IL++ LLER PR+LSG Sbjct: 81 IAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQRAAAILELGALLERTPRQLSG 140 Query: 130 GQRQRVAIGRAIVRKPRLFLFDEPLSNLDAALRVQTRLEIAKLHKQLAATIVYVTHDQVE 189 GQRQRVA+GRAIVRKP +FLFDEPLSNLDA LRVQ RLEI KLH L T +YVTHDQVE Sbjct: 141 GQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEIQKLHASLRTTSLYVTHDQVE 200 Query: 190 AMTLGDKIVVMHDGHIQQAGTPLELYQHPQNLFVAGFIGSPKMNFLPGLVTAVAEDALEV 249 AMTLG +++VM+ G +Q GTP E+Y P FVA FIGSP MN L G ++A D Sbjct: 201 AMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGSPPMNLLQGKLSA---DGASF 257 Query: 250 AVTGGRKVRVDVVPG--NAKVGDKLTLGLRAEHIHENSAGS-EQFGGKVNLVEHLGEANF 306 V+ G + +P G + LG+R EH+ GS Q +V LVE LG A Sbjct: 258 EVSKGNASDILRLPQPLTGAAGQERILGVRPEHLLPILDGSAAQLSLEVELVEALG-AEL 316 Query: 307 IYVTLSGGQDIVVRGDGNRNVDIGEEIVLSANSNAFHVFD 346 + GGQ +V+R N V G+ I S + H FD Sbjct: 317 LVHARCGGQALVLRCPANVQVRTGQRIGASFGAGDVHWFD 356 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,202,513 Number of extensions: 53514 Number of successful extensions: 584 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 367 Number of HSP's successfully gapped: 143 Length of query: 366 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 280 Effective length of database: 1,212,660 Effective search space: 339544800 Effective search space used: 339544800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)