BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0074.p
         (242 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313837|ref|YP_003777929.1| N-acetylglucosamine-6-phosphate...   324   4e-90

>gi|300313837|ref|YP_003777929.1| N-acetylglucosamine-6-phosphate
           deacetylase [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  324 bits (830), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 165/230 (71%), Positives = 187/230 (81%), Gaps = 6/230 (2%)

Query: 12  TQVRGNVLTPHGWIDGAISFGDLICNIDGSPLEFEPADGTPHANNGDYVLPGFIDLHVHG 71
           T++ GNVLTP GW  G++ F   I +IDG PL  EP       + GDY+LPGFIDLHVHG
Sbjct: 5   TELHGNVLTPQGWTHGSMVFDQRIRSIDGRPLRREPR----LIDEGDYILPGFIDLHVHG 60

Query: 72  GGGKDVMEGGDAIDVIARLHARYGTTSLLATTMTAPLDELEAALKAIGSASRRREPGSGR 131
           GGG+DVMEGGDA+ V+ARLHAR+GTTSLLATTMTAPL ELE ALKAI +++  R PG   
Sbjct: 61  GGGRDVMEGGDAVQVLARLHARHGTTSLLATTMTAPLAELEVALKAIRTSTDTRPPG--H 118

Query: 132 ARILGVHLEGPYINPGKLGAQPDFAIEATLEQVDWLASFAPIKLITIAPEVDGHLELVRI 191
           AR+LGVHLEGPYINPGKLGAQPDFAIEA+LEQVD L S API+LITIAPEVDGHL+LV  
Sbjct: 119 ARVLGVHLEGPYINPGKLGAQPDFAIEASLEQVDHLNSLAPIRLITIAPEVDGHLKLVCK 178

Query: 192 LTTGGMLVQIGHTLGTYEDGVAALKNGAAGFTHLFNAMSGFHHREPGMAG 241
           L   GM VQIGHT G+Y+DGVAAL +GA+GFTHLFNAMSGFHHR PGM G
Sbjct: 179 LAHRGMKVQIGHTDGSYDDGVAALAHGASGFTHLFNAMSGFHHRAPGMVG 228


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 832,103
Number of extensions: 36168
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 159
Effective length of database: 1,226,865
Effective search space: 195071535
Effective search space used: 195071535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)