BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0072.p (233 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312480|ref|YP_003776572.1| dipeptide/oligopeptide/nickel A... 88 5e-19 gi|300311170|ref|YP_003775262.1| dipeptide/oligopeptide/nickel A... 83 2e-17 gi|300310861|ref|YP_003774953.1| dipeptide/oligopeptide/nickel A... 74 8e-15 gi|300310464|ref|YP_003774556.1| dipeptide/oligopeptide/nickel A... 59 3e-10 gi|300310893|ref|YP_003774985.1| dipeptide/oligopeptide/nickel A... 59 4e-10 >gi|300312480|ref|YP_003776572.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 305 Score = 88.2 bits (217), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 88/156 (56%), Gaps = 1/156 (0%) Query: 1 MISYLIRRVLYAMPIMLGVAFLCFMLVHIAPGDPLVAILPPDASVDLQKQLMELYGFNRS 60 M+ Y++RR+ A+ + + V+ + F L+H++ GD V+I P+A+ + + +G +R Sbjct: 1 MLIYILRRLAIALCVAVTVSVVSFTLLHMS-GDLAVSIAGPEATAAQVESVRTQFGLDRP 59 Query: 61 YPEQFFSWVWRAMHGDLGSSIATGRPVAQEVFKAVGNTFMIAALATLIGFFFGSLFGFVA 120 Q+ W+ RA+ D G S PV + + + + TF + A L+ G +A Sbjct: 60 MATQYLDWLGRAVQLDFGKSFYFQGPVMEMIAERLPITFKLGGSALLLAVLTAIPLGVLA 119 Query: 121 GYFRNSWVDKIASFISVVGVSVPHYWLGMVLVIIFS 156 +R++W+D+ A I+VVG ++P +W G+ L++IF+ Sbjct: 120 AIYRDTWLDRAALLIAVVGQAMPSFWFGLTLILIFA 155 Score = 67.4 bits (163), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 51/73 (69%) Query: 159 MAVMGLQLGYLLGGSILIETVFSWPGTGFLLNQAIFQRDLPLLQGTILVLALFFVSLNLL 218 +A+ ++LG++LGGS++IE+V+S G G L AI + D P++Q +L++A+F++ L L Sbjct: 231 VALAAVELGFMLGGSVVIESVYSMQGLGQLAWDAISRNDYPVVQAVVLIIAMFYIGLTFL 290 Query: 219 VDILQTVFDPRIE 231 D++ + DPRI Sbjct: 291 ADVINALLDPRIR 303 >gi|300311170|ref|YP_003775262.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 306 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 7/169 (4%) Query: 1 MISYLIRRVLYAMPIMLGVAFLCFMLVHIAPGDPLVAILPPDASVDLQKQLMELYGFNRS 60 M S++I+R+L +P +L VA L F+ VH+ PGDP P+A + G ++ Sbjct: 1 MFSFVIKRLLGLIPTLLLVAVLVFLFVHLLPGDPARLAAGPEADDKTVALVRADLGLDKP 60 Query: 61 YPEQFFSWVWRAMHGDLGSSIATGRPVAQEVFKAVGNTFMIAALATLIGFFFGSLFGFVA 120 PEQF ++ A GD G SI T RPV++E+ T + +A + FG + G + Sbjct: 61 LPEQFVNFFLNAARGDFGHSIRTKRPVSEEISARFWPTLWLTVVAMVWAVLFGLIIGISS 120 Query: 121 GYFRNSWVDKIASFISVVGVSVPHYWLGMVLVIIFSSAMAVMGLQLGYL 169 +RN W D++ ++V G+S P + LG++LV +FS ++LG+L Sbjct: 121 AVWRNQWPDRLGMTLAVSGISFPAFSLGILLVQVFS-------VKLGWL 162 Score = 79.3 bits (194), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 38/73 (52%), Positives = 53/73 (72%) Query: 159 MAVMGLQLGYLLGGSILIETVFSWPGTGFLLNQAIFQRDLPLLQGTILVLALFFVSLNLL 218 + +MGLQ G+LLGGSIL+E VF+WPG G LL A+ RD P++Q IL+ +L F+ +NL+ Sbjct: 232 VTMMGLQFGFLLGGSILVEVVFNWPGMGRLLVDAVEMRDYPVIQAEILLFSLEFIFINLV 291 Query: 219 VDILQTVFDPRIE 231 VD+L V +P I Sbjct: 292 VDVLYAVINPSIR 304 >gi|300310861|ref|YP_003774953.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 324 Score = 74.3 bits (181), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 37/70 (52%), Positives = 47/70 (67%) Query: 160 AVMGLQLGYLLGGSILIETVFSWPGTGFLLNQAIFQRDLPLLQGTILVLALFFVSLNLLV 219 A +G+QL L+ G +L+ET+F+WPG G L AIF RD+P++QGT LVL L FV N LV Sbjct: 252 AYLGVQLVMLVEGVVLVETIFAWPGIGHALVHAIFGRDVPMIQGTALVLGLMFVLFNALV 311 Query: 220 DILQTVFDPR 229 D DPR Sbjct: 312 DAACAFLDPR 321 >gi|300310464|ref|YP_003774556.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 318 Score = 59.3 bits (142), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 45/70 (64%) Query: 162 MGLQLGYLLGGSILIETVFSWPGTGFLLNQAIFQRDLPLLQGTILVLALFFVSLNLLVDI 221 + L L YLLGG I++E++F++PG L+ A+ RD+PL+Q ++ ++ L L D+ Sbjct: 247 VALSLSYLLGGVIIVESIFNYPGIATLMIDAVTTRDMPLVQACSMIFCAGYLLLVLTADV 306 Query: 222 LQTVFDPRIE 231 L V +PR++ Sbjct: 307 LAIVSNPRLK 316 Score = 57.8 bits (138), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 63/133 (47%) Query: 24 FMLVHIAPGDPLVAILPPDASVDLQKQLMELYGFNRSYPEQFFSWVWRAMHGDLGSSIAT 83 F + ++ PGD L A+ + L YG + P ++ W+ + G+ G S+ Sbjct: 28 FFITNLLPGDAAQTALGQAATPETVAALRLQYGLDLPAPLRYAHWLGNLLSGNPGMSLVN 87 Query: 84 GRPVAQEVFKAVGNTFMIAALATLIGFFFGSLFGFVAGYFRNSWVDKIASFISVVGVSVP 143 PVAQ + + + M+AA+ L+ G + +R S+ D+ + +V VSVP Sbjct: 88 NVPVAQMIGGRLPASLMLAAVTALVSVPLALFLGIFSAMYRGSFFDRAVNVSAVSMVSVP 147 Query: 144 HYWLGMVLVIIFS 156 + + V V+IF+ Sbjct: 148 EFLVATVAVMIFA 160 >gi|300310893|ref|YP_003774985.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 324 Score = 58.5 bits (140), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 48/73 (65%) Query: 159 MAVMGLQLGYLLGGSILIETVFSWPGTGFLLNQAIFQRDLPLLQGTILVLALFFVSLNLL 218 + V+GL+ G + +++ E++F+WPG G L+ +I D P++ ++V+ FV++NL+ Sbjct: 247 VTVVGLEFGSTIAFAVVTESIFAWPGAGKLILDSINALDRPVIVAYLMVIVCMFVTINLV 306 Query: 219 VDILQTVFDPRIE 231 VD+L + DPR+ Sbjct: 307 VDVLYKLLDPRVR 319 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.332 0.146 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 722,796 Number of extensions: 28788 Number of successful extensions: 144 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 10 Length of query: 233 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 151 Effective length of database: 1,231,600 Effective search space: 185971600 Effective search space used: 185971600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 129 (54.3 bits)