BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0070.p
         (334 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter perip...    96   4e-21
gi|300312481|ref|YP_003776573.1| dipeptide ABC transporter perip...    74   2e-14
gi|300311169|ref|YP_003775261.1| dipeptide ABC transporter perip...    61   1e-10

>gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 528

 Score = 95.9 bits (237), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 25/211 (11%)

Query: 65  LTQWDLSKADKASEVIPDLAVSWAVDAKDKTKWIFKLRPGVKFHDGSAFNADAVVWNVAK 124
           L  WDL   +  ++++P LAVSW     D   W FKLRP VK+ DG  F AD V+++  +
Sbjct: 57  LHFWDLLVQNDYNKLVPGLAVSWK--NIDPKTWEFKLRPNVKWQDGKPFTADDVIFSYQR 114

Query: 125 VLDKDAPNFDPSQVGVTASRMPTLRTAKKIDDLTVELTTSEPDSFLPINLTNLFMASPLQ 184
                     P  V   A  + T+ +    D LT+ + T+ P+  LP+NL ++ + S   
Sbjct: 115 ARAV------PGSVATFAGYLRTVESVTAKDPLTLVIKTNIPNPDLPLNLASVHIVS--- 165

Query: 185 WAKKLAAVPGSVTDKAERAKQAWAAFAADASGTGPFKMTKFVPRERLELARNPEYWDAKR 244
                           E++        A   GTGP+K   + P +R+ + RN +YW+ K 
Sbjct: 166 ------------KHIGEKSTTENYNSGAAVIGTGPYKFVSYTPGDRVVMQRNDDYWNGK- 212

Query: 245 RPQIDKVVMLPLPEANSRTAALLSGQVDWIE 275
            P  +KV    +    +RTAALLSG VD I+
Sbjct: 213 -PLWEKVNYRYINNGAARTAALLSGDVDVID 242


>gi|300312481|ref|YP_003776573.1| dipeptide ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 512

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 93/211 (44%), Gaps = 29/211 (13%)

Query: 68  WD--LSKADKASEVIPDLAVSWAVDAKDKTKWIFKLRPGVKFHDGSAFNADAVVWNVAKV 125
           WD  + +  K +E  P LA +W  ++   T  +  LR GV+F +G  F+AD VV+     
Sbjct: 65  WDTLIYRDPKTNEYKPQLATAWKWESP--TALVLDLRQGVQFQNGDKFSADDVVFTFNYA 122

Query: 126 LDKDAPNFDPSQVGVTASRMPTLRTAKKIDDLTVELTTSEPDSFLPINLTNLFMASPLQW 185
           +        P    VT      +++  K+ D  V +    P    P  L   ++A PL  
Sbjct: 123 VS-------PESKAVTRQNTDWIKSVDKLADYKVRINLKGP---FPAALE--YLAGPL-- 168

Query: 186 AKKLAAVPGSVTDKAERAKQAWAAFAADASGTGPFKMTKFVPRERLELARNPEYW--DAK 243
                     +   A   K     F+    GTGP+K+T   P + + L +NP Y+    +
Sbjct: 169 ---------PIYPAAYFKKVGLEGFSKAPIGTGPYKVTSVTPGQGVTLVKNPGYFKDSPQ 219

Query: 244 RRPQIDKVVMLPLPEANSRTAALLSGQVDWI 274
            +P I  +  + +P+  +R A L++G +DWI
Sbjct: 220 GQPTIGNIKFVVIPDPETRAAQLMTGAIDWI 250


>gi|300311169|ref|YP_003775261.1| dipeptide ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 523

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 25/223 (11%)

Query: 51  FEGNRFTGIPMYDSLTQWDLSKADKASEVIPDLAVSWAVDAKDKTKWIFKLRPGVKFHDG 110
           ++ N    + M  S  Q  L   DK  ++IP LA  + V +KD  ++  +L+ GVKF DG
Sbjct: 52  YDANDTLSLSMAKSFYQ-GLFGFDKDMKLIPVLAEGYLV-SKDGLEYTIRLKQGVKFQDG 109

Query: 111 SAFNADAVVWNVAKVLDKDAPNFDPSQVGVTASRMPTLRTAKKIDDLTVELTTSEPDSFL 170
           + F ADA    V  V D+     +P       +    +   + ++D TV++   EP S  
Sbjct: 110 TVFKADA----VKAVFDRVT---NPDNKLKRYNLFNRIAKTEILNDYTVKVVLKEPFSAF 162

Query: 171 PINLTNLFMASPLQWAKKLAAVPGSVTDKAERAKQAWAAFAADASGTGPFKMTKFVPRER 230
            IN+    +A P       +AV  S T   +   +     A    GTGPFK  ++   + 
Sbjct: 163 -INV----LAHP-------SAVMISPTALKQYGNK---DIAFHPVGTGPFKFVEWKQTDY 207

Query: 231 LELARNPEYWDAKRRPQIDKVVMLPLPEANSRTAALLSGQVDW 273
           +++A+   YW     P++D+++  P+ + N+R+A + +G+  +
Sbjct: 208 VKVAKFDGYWKPG-YPKVDEIIWKPVVDNNARSAMMQTGEAQF 249


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,049,652
Number of extensions: 41128
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 3
Length of query: 334
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 248
Effective length of database: 1,212,660
Effective search space: 300739680
Effective search space used: 300739680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)