BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0069.p (244 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311570|ref|YP_003775662.1| GntR family transcription regul... 71 7e-14 gi|300312613|ref|YP_003776705.1| transcription regulator protein... 62 5e-11 gi|300309587|ref|YP_003773679.1| GntR family transcription regul... 59 3e-10 gi|300313520|ref|YP_003777612.1| transcription regulator protein... 59 5e-10 gi|300312626|ref|YP_003776718.1| GntR family transcription regul... 57 1e-09 >gi|300311570|ref|YP_003775662.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 71.2 bits (173), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 60/201 (29%), Positives = 90/201 (44%), Gaps = 13/201 (6%) Query: 7 QTLQRQILSGTYKTGQMLPGQRDLAESLGISRASLREALSMLEALGFIRAMPGKGTLVTS 66 +TL I+ G G LP + DLA +SR +R+AL L + ++ G GT V Sbjct: 38 ETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVESLRGSGTYV-- 95 Query: 67 GRSSAASTPARSGAALPSS--AELQSTFQLRYVFEPAAAALAARVINAHTTPRLWGVQAR 124 + PA+ GA P + + + +LR V EP AA+AA N R+ + Sbjct: 96 -KEKPGLAPAQPGAE-PETRIGHIMNGLELRLVIEPECAAMAALRRNRQDLDRMERLLEG 153 Query: 125 FEDALKNVDLVSASQADLEFHQLIAELSGNGGLMQVVRDFETRISHS-----QRLPFADH 179 FE A + + A D FH+ IA +GN +QV++ E +SH+ + A Sbjct: 154 FEAANRVGGI--AHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNMLRHLMHIAPW 211 Query: 180 SRIWETAEEHRAIAAAISAGD 200 R + +EHR I I D Sbjct: 212 KRSQDAMDEHRQIFELIRVQD 232 >gi|300312613|ref|YP_003776705.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 61.6 bits (148), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 96/210 (45%), Gaps = 7/210 (3%) Query: 6 AQTLQRQILSGTYKTGQMLPGQRDLAESLGISRASLREALSMLEALGFIRAMPGKGTLVT 65 AQ L I SG K Q LP +R+LA LG+ R ++REA+ L LG +R G+GT V+ Sbjct: 16 AQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLGLLRIRQGEGTFVS 75 Query: 66 SGRSSAASTPARSGAALPSSAELQSTFQLRYVFEPAAAALAARVINAHTTPRLWGVQARF 125 S + P L + L+S F R + E AALAA I RL Sbjct: 76 SLETRELLEPLEMIIDL-NPGTLESLFDARLIIETGVAALAATHIEDAELDRLA---RNV 131 Query: 126 EDALKNV-DLVSASQADLEFHQLIAELSGNGGLMQVVRDFETRISHSQRLPFADHSRIWE 184 ED + + D + + AD+EFH+ I E N L + S+ + + + Sbjct: 132 EDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQSIAGSLYMLGKKSRSITSRIPATLER 191 Query: 185 TAEEHRAIAAAISAGDRLPRADXRARRHRV 214 + ++HR I A+ A D P+ A RH + Sbjct: 192 SLQDHRQILDALKARD--PQKASEAMRHHL 219 >gi|300309587|ref|YP_003773679.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 59.3 bits (142), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 80/188 (42%), Gaps = 22/188 (11%) Query: 24 LPGQRDLAESLGISRASLREALSMLEALGFIRAMPGKGTLVTSGRSSAASTPARSGAALP 83 LP +R LAE LG+SR S+REAL LE G + G G +T A+ P + P Sbjct: 45 LPPERALAEQLGVSRPSIREALVALELEGRVEIRMGSGVYLTQ-----AAPPGQQEEPAP 99 Query: 84 SSA---ELQSTFQLRYVFEPAAAALAARVINAHTTPRLWGVQARFEDALKNVDLVSASQA 140 L R +FE A AL A + L + E + S + Sbjct: 100 DKEMGNSLSDIMGARAIFEGAIVALVAPLAKPRDIKALRAIYDTMERECQAGQ--SPAAT 157 Query: 141 DLEFHQLIAELSGNGGLMQVVRDFETRISHSQRLPFA----DHSR---IWETA-EEHRAI 192 D +FH IA ++GN L+Q V R+ ++ P + DH W TA EHR I Sbjct: 158 DRDFHIRIARMTGNDVLVQTV----ARLYDERQDPISAKLLDHYEPEDSWLTALHEHREI 213 Query: 193 AAAISAGD 200 AI A D Sbjct: 214 LEAIEARD 221 >gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 58.5 bits (140), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 20/212 (9%) Query: 1 MPNIAAQTLQRQILSGTYKTGQMLPGQRDLAESLGISRASLREALSMLEALGFIRAMPGK 60 + + A+ L I +G + G LP + LA+ G+SR +REA++ L+ G + G Sbjct: 10 LSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGS 69 Query: 61 GTLVTSGRSSAASTPARSGAALPSSAE-LQSTFQLRYVFEPAAAALAARVINAHTTPRLW 119 G VT A P R SS E + +LR E AA AA+ +A L Sbjct: 70 GVFVT---EQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAED---LQ 123 Query: 120 GVQARFEDALKNVDLVSASQ---ADLEFHQLIAELSGNGGLMQVVR------DFETRISH 170 ++A A VD+ + AD+ FH+ +A+ + N ++ + + T ++ Sbjct: 124 AIEAAL--AQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVTR 181 Query: 171 SQRLPFADHSRIWETAEEHRAIAAAISAGDRL 202 + D SR + EEH AI AI AGD + Sbjct: 182 GNEARYEDFSR--QVREEHEAIVEAIRAGDEM 211 >gi|300312626|ref|YP_003776718.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/230 (28%), Positives = 101/230 (43%), Gaps = 31/230 (13%) Query: 9 LQRQILSGTYKTGQMLPGQRDLAESLGISRASLREALSMLEALGFIRAMPGKGTLVTSGR 68 L++ I+ G + G LP +RDLA LG+SR SLREAL LE G I G G V Sbjct: 19 LRKLIVEGEFAVGSRLPSERDLALQLGVSRPSLREALIALEVEGHIEVRMGSGIYVC--- 75 Query: 69 SSAASTPARSGAALPSSAELQSTFQLRYVFEPAAAALAARVINAHTTPRLWGVQARFEDA 128 P + + S+E + +L E +A + ++ V+ + Sbjct: 76 -----PPVQRERRIDLSSE-EGPLELIRAREMIEGEVAYAAAQHGSKQQIAAVEEAYALM 129 Query: 129 LKNVDL-VSASQADLEFHQLIAELSGNGGLMQVVRD-FETRIS------HSQRLPFADHS 180 + N + +AD FH +AE +GN L+ +V F+ R+ HS D + Sbjct: 130 ISNAQAGIDPLEADRLFHIRLAEATGNSVLVGLVTQLFDARLGPLFKRLHSH----FDGT 185 Query: 181 RIWETA-EEHRAIAAAISAGDRLP-RADXRARRH------RVSPTLIKRF 222 R+W+ A +EH + A+ R P +A RRH R S LI+ + Sbjct: 186 RVWQEAIDEHALVMEALR--QRNPEQARAAMRRHMDIAFTRYSANLIREY 233 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.129 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 649,014 Number of extensions: 22202 Number of successful extensions: 168 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 11 Length of query: 244 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 161 Effective length of database: 1,226,865 Effective search space: 197525265 Effective search space used: 197525265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)