BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0068.p
         (327 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313991|ref|YP_003778083.1| major facilitator superfamily p...   353   2e-98

>gi|300313991|ref|YP_003778083.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score =  353 bits (905), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 185/264 (70%), Positives = 230/264 (87%)

Query: 56  GAARAFSMLMLVFGLAPILAPFIGGLLLTFSTWRAIFATLTVFGVICLIFTHRVMEETRD 115
           G+A+AFSMLMLVFGLAPILAPFIGGL+L F++WR IF  LT+FG++C++ T + + ET D
Sbjct: 136 GSAKAFSMLMLVFGLAPILAPFIGGLMLVFASWRGIFVVLTLFGLLCILGTRKYLTETVD 195

Query: 116 QAHVVPLHLGRVLRQYLGLLRHRQFMAYVLCGGLIQAGLFAYISGGPFVLIELHGIKPQN 175
            +   PLHLGR LRQY GLLRHRQFM+YVLCGGL+QAG+FAYI+GGPFV+IELHG+KPQ 
Sbjct: 196 VSRAEPLHLGRTLRQYWGLLRHRQFMSYVLCGGLVQAGMFAYIAGGPFVVIELHGVKPQY 255

Query: 176 FGFVFGANAIGLIACSQINARLVIKRSADRVLGKIIWIPAILTTIVAVLVACGYESLPLL 235
           FGFVF +NAIGLIA SQ+NARLV+KRSA+RVLGK++W+PA L+  V++LV  G E+LPLL
Sbjct: 256 FGFVFASNAIGLIAASQVNARLVVKRSAERVLGKVLWVPAGLSLTVSLLVLVGLETLPLL 315

Query: 236 LIGFFGFLSCHGFVGPNASAIALAQQGKQAGTAAALMGTLQFGIGMLSGVIMGVWHDGTA 295
           L+GFFGFL+ +GF GPNA+AIAL  QG+QAGTAAALMG+LQFG+G+LSGV M +WHDGTA
Sbjct: 316 LLGFFGFLTAYGFTGPNATAIALKHQGRQAGTAAALMGSLQFGMGVLSGVAMSLWHDGTA 375

Query: 296 LPLTTLMAVCGIAALLLYRYVARH 319
           LPL ++MAVCG+ ALL+Y + A+H
Sbjct: 376 LPLVSVMAVCGVTALLVYHFAAKH 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.144    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 939,883
Number of extensions: 37435
Number of successful extensions: 389
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 2
Length of query: 327
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 242
Effective length of database: 1,217,395
Effective search space: 294609590
Effective search space used: 294609590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 131 (55.1 bits)