BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0065.p
         (341 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313838|ref|YP_003777930.1| glucosamine 6-phosphate synthas...   489   e-139
gi|300313709|ref|YP_003777801.1| L-glutamine:D-fructose-6-phosph...   110   2e-25

>gi|300313838|ref|YP_003777930.1| glucosamine 6-phosphate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score =  489 bits (1260), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/337 (77%), Positives = 280/337 (83%), Gaps = 1/337 (0%)

Query: 5   MLKEARSAGSHVAEQLARDQARYAELGRWLRTAPPSGIVTVARGSSDHAANYCAYLTMVR 64
           MLKEARSA  +VA QL RDQ RYA LG  LR APP+ IVTVARGSSDHAA YCAYL M R
Sbjct: 1   MLKEARSAADYVAVQLTRDQDRYAALGARLRAAPPANIVTVARGSSDHAATYCAYLIMAR 60

Query: 65  LGHIVASLPMSLLTLNKAPLIARDALAIAISQSGQSPDVIEPIRYFRDGGATTVALVNDA 124
           LG IVASLPMSL+TLN APL  RDALAIA+SQSGQSPDV+EPIRYF   GATTVALVN A
Sbjct: 61  LGRIVASLPMSLVTLNHAPLQVRDALAIAVSQSGQSPDVVEPIRYFHAQGATTVALVNQA 120

Query: 125 ESPLAQTAEWTLPLHAGAELSVAATKSFIASLVAGALFAGHWQDDAGFLHALESLPESLQ 184
           +SPLA  A+W+LPLHAG E SVAATKSFIASLVA AL   HWQDDA  L+AL  LP++L+
Sbjct: 121 DSPLASAAQWSLPLHAGVESSVAATKSFIASLVASALLTAHWQDDAALLNALAQLPDALR 180

Query: 185 RAADSDWSKAVEILAPARNIMVVGRGIGFPLALEAALKFKETSAIQAEAFSGAEIKHGPM 244
            A   DWS AV+ L PA  IMVVGRGIGFPLALEAALK KET AIQAEAFSGAEIKHGP+
Sbjct: 181 AACACDWSDAVQALTPADRIMVVGRGIGFPLALEAALKCKETCAIQAEAFSGAEIKHGPI 240

Query: 245 ALIHEDYPLLMFATRGPTQAGMLQLAXIEMRQRGAKVLLAAPADIAERDLTLPTAVTPDL 304
           ALI E YPLLMFA RGP+QAGML LA  EMR RGAKVLLAAP D+ ERDLTLP A TPDL
Sbjct: 241 ALIEEGYPLLMFAIRGPSQAGMLALAA-EMRVRGAKVLLAAPEDVVERDLTLPVAATPDL 299

Query: 305 DPIVAIQAFYVMAAQLSVARGMDPDKPRHLSKVTKTS 341
           DPIVAIQAFYVMAAQLS ARGMD D+PRHL+KVTKT+
Sbjct: 300 DPIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKTN 336


>gi|300313709|ref|YP_003777801.1| L-glutamine:D-fructose-6-phosphate
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 605

 Score =  110 bits (274), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/268 (32%), Positives = 138/268 (51%), Gaps = 24/268 (8%)

Query: 89  ALAIAISQSGQSPDVIEPIRYFRD-GGATTVALVNDAESPLAQTAEWTLPLHAGAELSVA 147
           +L + ISQSG++ D +  +++ R  G   T+ + N A S + +  E      AG E+ VA
Sbjct: 337 SLVVTISQSGETADTLAALKHARSLGMQHTLTICNVATSAMVRECELAYITRAGVEVGVA 396

Query: 148 ATKSFIASLVAGALFAGHW---------QDDAGFLHALESLPESLQR--AADSDWSKAVE 196
           +TK+F   L A  L              + +A  L A+  LP +LQ   A +       E
Sbjct: 397 STKAFTTQLAALFLLTLALAQTRGLLTEEQEAEHLKAMRHLPAALQSVLALEPSIVAWAE 456

Query: 197 ILAPARNIMVVGRGIGFPLALEAALKFKETSAIQAEAFSGAEIKHGPMALIHEDYPLLMF 256
             A   N + +GRG+ +P+ALE ALK KE + I AEA++  E+KHGP+AL+ +  P++  
Sbjct: 457 SFARRENALFLGRGLHYPIALEGALKLKEITYIHAEAYAAGELKHGPLALVTDQMPVVTI 516

Query: 257 ATRGPTQAGMLQLAXI--EMRQRGAKVLLAAPAD--IAERDLTLPTAVTPD----LDPIV 308
           A   P  A + +L     E+R RG ++ + A  D  I+  +  L     P+    L PI+
Sbjct: 517 A---PNDALVEKLKSNMQEVRARGGQLYVFADGDSHISSAE-GLHVIRMPEHYGVLSPIL 572

Query: 309 AIQAFYVMAAQLSVARGMDPDKPRHLSK 336
            +    +++   ++ARG D DKPR+L+K
Sbjct: 573 HVVPLQLLSYHTALARGTDVDKPRNLAK 600


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,053,837
Number of extensions: 42818
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,212,660
Effective search space: 309228300
Effective search space used: 309228300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)