BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0054.p (301 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310298|ref|YP_003774390.1| glycerol-3-phosphate regulon re... 191 5e-50 gi|300313730|ref|YP_003777822.1| DeoR family transcription regul... 88 7e-19 gi|300310357|ref|YP_003774449.1| DeoR family transcription repre... 57 2e-09 >gi|300310298|ref|YP_003774390.1| glycerol-3-phosphate regulon repressor transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 191 bits (486), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 104/238 (43%), Positives = 146/238 (61%) Query: 21 RHNEIIALFRQHGFLTMEALAEHFAVTTQTIRRDINALCDADILRRRHGGAELILSARNQ 80 R ++ R+HG +++E LA+ VTTQT+RRD+ A+ DA +L R HGG L+ S N Sbjct: 21 RQQTLLECVRKHGTISVEELAQQLNVTTQTVRRDVKAMVDASLLARYHGGVGLLSSTENI 80 Query: 81 PYDMRRINNLEQKAEIGAAVAALIPNSCSVLIGIGTTPEQVALALAKHDHLTVITNNLRA 140 Y R++ + E K IG VAA +P+ CS+++ +GTT E+VALAL +H +L V+TNNL Sbjct: 81 AYPQRQVMHAEAKRRIGRTVAARVPDGCSLILNLGTTTEEVALALQQHKNLHVVTNNLNV 140 Query: 141 ALALSTNQNNQVIVPGGTLRFPNPEILGNDADKLFRNFRADFGIYGVGGVDTDGTLLDFD 200 A +L++N +VI+ GG +R + I+G R F+ D GI G+ ++ DG L DFD Sbjct: 141 ANSLASNPALEVIIAGGVVRARDRGIVGEATIDFIRQFKVDIGIIGISSIEMDGVLRDFD 200 Query: 201 RMESSSRQALRESCRTQILVTDNSKFGRQAPVRGGHLSDPDILVTDSPLSPTLAAMLA 258 E Q + E R LV D SKFGRQA V+ HLS D+L TD+P P LA +LA Sbjct: 201 AREVKVAQTIIEQSRQVWLVADASKFGRQALVKMAHLSQIDVLFTDAPPPPELAKLLA 258 >gi|300313730|ref|YP_003777822.1| DeoR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 88.2 bits (217), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 120/261 (45%), Gaps = 14/261 (5%) Query: 21 RHNEIIALFRQHGFLTMEALAEHFAVTTQTIRRDINALCDADILRRRHGGAELILSARN- 79 R +++L +H LT+E + T+RRDI L + D+L R GGAE + R+ Sbjct: 6 RRKRLLSLLGEHTALTVEQFCHLLNASAATVRRDIAWLAERDMLTRTRGGAERLAQKRSA 65 Query: 80 -----QPYDMRRINNLEQKAEIGAAVAALIPNSCSVLIGIGTTPEQVALALAKHDHLTVI 134 + + QK I A + N +++I GTT +A LA+ L ++ Sbjct: 66 FALSGETFQASLARQPAQKRAIARHAAEMCDNGETIIINGGTTTFLMAEYLAQ-KRLKIL 124 Query: 135 TNNLRAALALSTNQNNQVIVPGGTLRFPNPEILG---NDADKLFRNFRADFGIYGVGGVD 191 TN+ A L T NQ+IVPGG + IL ND + + GIYGV + Sbjct: 125 TNSFLMAERLLTTSENQIIVPGGQIYREQNVILSPFENDITQHHYASKMFMGIYGVSMLG 184 Query: 192 TDGTLLDFDRMESSSRQALRESCRTQILVTDNSKFGRQAPVRGGHLSDPDILVTDSPLSP 251 L++ D + + + L +++ D+SKF R+A + L+ + LVTD+ +S Sbjct: 185 ----LMEADPLLIQAEKRLLGQAEQLVVLADSSKFSRKAGLILCGLNRVNCLVTDTGISD 240 Query: 252 TLAAMLAGNTRVVVTSEPDSK 272 A M+ VVT P+ + Sbjct: 241 AAAQMMEQAGVKVVTVAPEHE 261 >gi|300310357|ref|YP_003774449.1| DeoR family transcription repressor protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 99/239 (41%), Gaps = 16/239 (6%) Query: 2 SATPAVTPSLKPVL--KPASLRHNEIIALFRQHGFLTMEALAEHFAVTTQTIRRDINA-- 57 ++TP+ T + +P L + +LR + + R HG + +A+ VT T+RRD+ Sbjct: 4 TSTPS-TKAAQPTLGARSRALRLTRMQEMIRDHGPTPLSRIADVLGVTVMTVRRDLAGED 62 Query: 58 ---LC-DADILRRRHGGAELILSARNQPYDMRRINNLEQKAEIGAAVAAL-IPNSCSVLI 112 +C +L GG+E N+ R + Q+ + AA + S+ I Sbjct: 63 SPLICLGGHVLEASPGGSE------NRYSIDREADQHAQRKRLACQHAARRVVEGDSLFI 116 Query: 113 GIGTTPEQVALALAKHDHLTVITNNLRAALALSTNQNNQVIVPGGTLRFPNPEILGNDAD 172 GTT +A AL L+VI +L A +S N QVI+ GG + + Sbjct: 117 DCGTTMTHLAEALPPEIGLSVICYSLNIANIVSQRPNTQVILLGGLYHPSSASFASEEGV 176 Query: 173 KLFRNFRADFGIYGVGGVDTDGTLLDFDRMESSSRQALRESCRTQILVTDNSKFGRQAP 231 + + GGVD + + E +QA ES +V D SK GR P Sbjct: 177 AYLKRLGVNKAFLSAGGVDARRGVSCSNFHEVPIKQAAIESAAQCYVVIDQSKLGRFRP 235 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 969,979 Number of extensions: 40045 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 3 Length of query: 301 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 216 Effective length of database: 1,217,395 Effective search space: 262957320 Effective search space used: 262957320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)