BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0053.p (175 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313187|ref|YP_003777279.1| transcription regulator protein... 171 2e-44 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 79 2e-16 gi|300311443|ref|YP_003775535.1| LysR family transcription regul... 73 2e-14 gi|300310408|ref|YP_003774500.1| LysR family transcription regul... 72 2e-14 gi|300311424|ref|YP_003775516.1| LysR family transcription regul... 69 2e-13 >gi|300313187|ref|YP_003777279.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 171 bits (434), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 82/107 (76%), Positives = 91/107 (85%) Query: 36 FQRSTRSLSLTEAGERFLREVSGGLSSIQSAVANLASADGQPAGVLKVSMGTGFGREYIV 95 F RSTR LSLTEAGERFL+EV GGL +I+SAVANLASA GQPAG LKVSMGTGFGR+YIV Sbjct: 49 FHRSTRKLSLTEAGERFLQEVGGGLQAIRSAVANLASAGGQPAGTLKVSMGTGFGRQYIV 108 Query: 96 PLLGGFLERYPAISPDWYFDNRPVDLITEGFDAAIGGGXLITEGFDA 142 PLLG FL RYP I PDW+F+NRPVDLI+EGFDAAI GG ++ G A Sbjct: 109 PLLGEFLGRYPGIQPDWHFENRPVDLISEGFDAAIAGGTELSPGVVA 155 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 79.0 bits (193), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 62/103 (60%) Query: 28 QRRLTSGTFQRSTRSLSLTEAGERFLREVSGGLSSIQSAVANLASADGQPAGVLKVSMGT 87 + RL S QR+TR LSLTEAG +L +++++ A L+S +P G+L+++ Sbjct: 41 EARLGSRLMQRTTRRLSLTEAGALYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPL 100 Query: 88 GFGREYIVPLLGGFLERYPAISPDWYFDNRPVDLITEGFDAAI 130 FG ++ PL FLER+P IS D +R VD+I EG+D AI Sbjct: 101 TFGVLHLAPLWPMFLERHPEISLDITLSDRIVDIIDEGYDMAI 143 >gi|300311443|ref|YP_003775535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 54/100 (54%) Query: 36 FQRSTRSLSLTEAGERFLREVSGGLSSIQSAVANLASADGQPAGVLKVSMGTGFGREYIV 95 QRSTR L++T AG F + GL I+ A A+L + G+PAG L+V+ F + + Sbjct: 49 LQRSTRQLNMTAAGREFFERCAPGLEDIEHASASLTESQGEPAGSLRVAAPVDFFDNFSI 108 Query: 96 PLLGGFLERYPAISPDWYFDNRPVDLITEGFDAAIGGGXL 135 + F+ YP + ++ ++ DLI EG D A GG L Sbjct: 109 EWMHEFMHLYPKVQLEFVLNDGRADLIAEGIDLAFRGGVL 148 >gi|300310408|ref|YP_003774500.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 72.4 bits (176), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 4/115 (3%) Query: 38 RSTRSLSLTEAGERFLREVSGGLSSIQSAVANLASADGQPAGVLKVSMGTGFGREYIVPL 97 R+TRS+ TEAG R+L + L+ I A A A QP+G L V+ FG+ +++P+ Sbjct: 51 RTTRSVKTTEAGARYLEDCRRILAEIAEAEAAAAGHYDQPSGTLSVTAALLFGQMHVLPI 110 Query: 98 LGGFLERYPAISPDWYFDNRPVDLITEGFDAAIGGGXLITEGFDA----AIRRIV 148 + +L+ YP + +F +RPV+++ EG D A+ G L GF A ++RR++ Sbjct: 111 VTEYLDLYPGMRARTFFIDRPVNIVEEGMDVAVRIGHLPDSGFTAIQVGSVRRVI 165 >gi|300311424|ref|YP_003775516.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 69.3 bits (168), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 62/103 (60%) Query: 28 QRRLTSGTFQRSTRSLSLTEAGERFLREVSGGLSSIQSAVANLASADGQPAGVLKVSMGT 87 +R L + R+TR ++LTEAGER+L +S + A A ++A +P+G L++ T Sbjct: 42 ERHLRTRLMNRTTRRIALTEAGERYLLRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMT 101 Query: 88 GFGREYIVPLLGGFLERYPAISPDWYFDNRPVDLITEGFDAAI 130 FG+ Y++P + G+ +RYP ++ + R D++ EG+D ++ Sbjct: 102 SFGQRYVIPSISGYHKRYPDVAVELTLAQRIPDMLEEGYDVSL 144 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.131 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 537,159 Number of extensions: 23447 Number of successful extensions: 147 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 17 Length of query: 175 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 96 Effective length of database: 1,245,805 Effective search space: 119597280 Effective search space used: 119597280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)