BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0049.p (424 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312387|ref|YP_003776479.1| sugar ABC transporter periplasm... 445 e-126 gi|300313089|ref|YP_003777181.1| glycerol-3-phosphate ABC transp... 156 3e-39 gi|300311925|ref|YP_003776017.1| glycerol-3-phosphate ABC transp... 81 1e-16 >gi|300312387|ref|YP_003776479.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 430 Score = 445 bits (1144), Expect = e-126, Method: Compositional matrix adjust. Identities = 212/406 (52%), Positives = 280/406 (68%), Gaps = 6/406 (1%) Query: 24 MASAATELTMYYPIAVGGPLTDVIDGMINDFQKSNPDIKVKAVYSGNYDETRVRALSAIK 83 +A+ E++ YYP+AVGG +T ID M+ DF+K++PDIKVKA+Y+G Y E+ V+AL+A K Sbjct: 23 LAANPVEISFYYPVAVGGAVTKTIDSMVADFEKAHPDIKVKAIYAGTYQESIVKALTAFK 82 Query: 84 GGQPAQLSVLGALDTYDLIDQNLIEPFDKVATSAEDKAWLQSFYPGLMANGTIGGHVWGI 143 GG P L+VL + D + LID+N I P D +A+SAEDK W+ FY G M N G WGI Sbjct: 83 GGTPPTLAVLLSTDLFTLIDENAILPIDSLASSAEDKKWIAGFYKGFMENSQTEGKTWGI 142 Query: 144 PFQRSTIVMFYNKDMFRAAGLNPDAPPKTWKEMLAAATKLTGKD------KFGLMIPSTG 197 PFQRSTIVM+YNK +F+ AGLNPD P W EM+ AA KLT +D ++G+ IPSTG Sbjct: 143 PFQRSTIVMYYNKALFKEAGLNPDKAPANWNEMVEAAKKLTKRDAAGNVTQWGVKIPSTG 202 Query: 198 YPYWMFQAFAIQNGVSLMNKEGTQVYFNTPAAVEALEFWRSLAATHKVSPAGAIEWGTLR 257 + YWMFQA N LMN GT+ YF+ P AV+AL+ W L KV PAG+IEWGT Sbjct: 203 FGYWMFQAMTASNDTLLMNSAGTKTYFDKPGAVQALQHWVDLTTKEKVMPAGSIEWGTTP 262 Query: 258 QAFVQGQTAMMWHTTGNLTAVKKEAKFDFGVAMLPANKQPGSPVGGGNFYLFKGSSPAQQ 317 + F++ + AM+W TTGNLT ++ A F FGVAMLP K PGSP GGGNFY+F +SPA+Q Sbjct: 263 KDFLEQKAAMVWTTTGNLTNIRTNASFPFGVAMLPGIKHPGSPTGGGNFYVFNKTSPAEQ 322 Query: 318 AASVNFVRWMTAPERAAQWSIATGYVGTSPASYNTPALRDYAKTFPQALVARDQLAVAIP 377 A++ F+R+ T P RAAQWSIATGYV +++TP ++ Y + P A VAR+Q+ + Sbjct: 323 QAAMKFIRFATEPARAAQWSIATGYVAPRQDAWDTPEMKKYLQDVPAADVAREQMKYGVA 382 Query: 378 EFSTEQTARVREALSNAVQAALTGTKTSKQALDEAQATAERLLKPY 423 E ST RV +AL++ +QAAL+ TKT + AL +AQ AER+L+ Y Sbjct: 383 ELSTHDNQRVTKALNDNLQAALSDTKTPEAALKDAQREAERILRSY 428 >gi|300313089|ref|YP_003777181.1| glycerol-3-phosphate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 437 Score = 156 bits (394), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 123/437 (28%), Positives = 202/437 (46%), Gaps = 30/437 (6%) Query: 1 MLSKLIKKTALAALFASALTASSMASAATELTMYYPIAVGGPLTDVIDGMINDFQKSNPD 60 M+ LI LA + +SA AAT +T ++ + G L + ++ + +DF K+ D Sbjct: 3 MMKTLIATGVLATITSSAF-------AATAITWWHSMT--GALGERVNALADDFNKTQGD 53 Query: 61 IKVKAVYSGNYDETRVRALSAIKGGQ-PAQLSVLGALDTYDLIDQNLIEPFDKVATSAED 119 K+ VY G YDE+ A++A + G PA L V + + ++P +V A + Sbjct: 54 YKIVPVYKGTYDESMSAAIAAYRAGNAPAILQVFEVGTATMIYAKGAVKPVYEVMHQAGE 113 Query: 120 KAWLQSFYPGLMANGTIGGHVWGIPFQRSTIVMFYNKDMFRAAGLNPDAPPKTWKEMLAA 179 K ++ P + + + PF ST +MFYNKDMF AGL+P+ PP TW+E + Sbjct: 114 KFDQNAYVPAVAGYYSTPKGMMSFPFNSSTTIMFYNKDMFAKAGLDPEKPPVTWQEFVGM 173 Query: 180 ATKLTGKDKFGLMIPSTGYPYWM-FQAFAIQNGVSLMNKEG------TQVYFNTPAAVEA 232 A K+ K +T + W+ ++F+ + V L K ++ N+P V Sbjct: 174 AAKI--KASGAACAYTTTWQSWVHLESFSTWHNVELATKNNGFGGLDARLKMNSPLHVRH 231 Query: 233 LEFWRSLAATHKVSPAGAIEWGTLRQAFVQGQTAMMWHTTGNLTAVKKEAKFDFGVAMLP 292 +E + A + AG + + F G+ A++ ++ ++K AKF FGVA LP Sbjct: 232 IENLSNWAKQGYFTYAGRKDEANAK--FNAGECAIITGSSSAYADIRKNAKFKFGVATLP 289 Query: 293 -ANKQPGSP----VGGGNFYLFKGSSPAQQAASVNFVRWMTAPERAAQWSIATGYVGTSP 347 N G+P +GG + ++ G + F +++ PE AA+W TGY+ + Sbjct: 290 YYNDVQGAPQNTVIGGASLWVMNGKKADEYKGVAKFFSYLSKPEVAAKWHQDTGYLPVTK 349 Query: 348 ASYNTPALRDYAKTFPQALVARDQLAVAIPEFST----EQTARVREALSNAVQAALTGTK 403 A+Y + + P VA Q+ V E S A+VR ++ TG K Sbjct: 350 AAYELTKSSGFYERNPGTDVAVKQMIVKTTEKSRGLRLGNYAQVRTVFDEELENVWTGKK 409 Query: 404 TSKQALDEAQATAERLL 420 ++K ALD A + LL Sbjct: 410 SAKDALDSAVKRGDELL 426 >gi|300311925|ref|YP_003776017.1| glycerol-3-phosphate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 452 Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 86/399 (21%), Positives = 164/399 (41%), Gaps = 21/399 (5%) Query: 41 GPLTDVIDGMINDFQKSNPDIKVKAVYSGNYDETRVRALSAIKGGQPAQLSVLGALDTYD 100 G + + + F + +V+ V G Y++T + ++ + Q L + + T D Sbjct: 48 GAMAQAVRQLCAGFNAAQQQHQVRCVVPGTYEQTMQKTIATYRAAQQPALVEIYDVGTLD 107 Query: 101 LIDQNLIEPFDKVATSAEDKAWLQSFYPGLMANGTIG-GHVWGIPFQRSTIVMFYNKDMF 159 ++ I P ++ + Q + P + T G +PF ST V++ N D Sbjct: 108 MMLSGAIVPVHQLMADHGYRVDWQDYLPAIRGYYTDAQGQFDSLPFNVSTAVLYLNTDQL 167 Query: 160 RAAGLNPDAPPKTWKEMLAAATKLTGKDKFGLMIPSTGYPYWMFQAFAIQNGVSLMNKE- 218 R AG++ P TW+E+ A +L + ++ S P+ + + + G + + + Sbjct: 168 RQAGIS--TLPSTWRELEQTARQLRAAGQTCPLV-SDFNPWILLEQVSTIEGAPIADHDN 224 Query: 219 -----GTQVYFNTPAAVEALEFWRSLAATHKVSPAGAIEWGTLRQAFVQGQTAMMWHTTG 273 F+ + ++ + H + A A G AF G+ AM++ +T Sbjct: 225 GHQGLAAHYLFDQGLHLRFMQQLQRWHQQHLLVEAAATRTGRHTLAFTTGECAMLFDSTS 284 Query: 274 NLTAVKKEAKFDFGVAMLPAN---KQPGSPVGGGNFYLFKGSSPAQQAASVNFVRWMTAP 330 A+ + V LP + ++ S GG + ++ KG AA F+ ++ P Sbjct: 285 AWHAIARSGLPHVAVRPLPIHADGQRHNSVPGGASLWVMKGFDRQVYAAVAAFIAYLQQP 344 Query: 331 ERAAQWSIATGYVGTSPASYNTPA-LRDYAKTFPQALVA--RDQLAVAIPEFSTEQT--A 385 + + TGY+ P + A + D +P A+VA A + P Sbjct: 345 QNQRLLARQTGYL---PVTRQVAAQIMDDPDHYPAAVVAGIHSLDAASQPGVGPRLGFFP 401 Query: 386 RVREALSNAVQAALTGTKTSKQALDEAQATAERLLKPYR 424 ++R A + VQ AL+G + QAL +A+ + LL+ +R Sbjct: 402 QLRLAWTEQVQMALSGQQDMAQALSKARQRGDALLQRFR 440 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.129 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,317,405 Number of extensions: 55930 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 4 Length of query: 424 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 336 Effective length of database: 1,203,190 Effective search space: 404271840 Effective search space used: 404271840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)