BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0048.p (306 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312388|ref|YP_003776480.1| sugar ABC transporter permease ... 297 9e-82 gi|300309613|ref|YP_003773705.1| sugar ABC transporter permease ... 126 2e-30 gi|300313088|ref|YP_003777180.1| sn-glycerol-3-phosphate ABC tra... 126 3e-30 gi|300313833|ref|YP_003777925.1| sugar ABC transporter permease ... 105 4e-24 gi|300312691|ref|YP_003776783.1| sugar ABC transporter permease ... 105 7e-24 >gi|300312388|ref|YP_003776480.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 297 bits (760), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 168/293 (57%), Positives = 215/293 (73%), Gaps = 3/293 (1%) Query: 14 ERRLHNLFGWGLLTPSLILLTLFAFYPMLATLWSSFHSRGTARRPSVFNGIENYRDLLSD 73 +R ++ W LL+P+++LL F YP LATLW SF S RPSVF G+ENYR + D Sbjct: 2 KRLPSSVLPWLLLSPAMVLLIAFTHYPALATLWHSFFSTPKGVRPSVFVGLENYRLMADD 61 Query: 74 PTFWQVAGNNLLYAGVTVPVSIALALGMALWANARIGGRXHRGLVRTAFFTPTMLPMIAA 133 P FWQ NNL +A T+P++IALA+ MALW N ++ GR G++R A+FTPT+LPMIA Sbjct: 62 PVFWQALCNNLWFALGTIPLAIALAILMALWVNEKLAGR---GVLRLAYFTPTVLPMIAV 118 Query: 134 ANLWLFFYTPGLGLLDHVTALFGIGPTNWLGQPGTALWSVMAVTIWKESGFFMIFYLAAL 193 AN+WLFFYTP GLL+ +T G+ NWLG P T L ++M V +WKE+GFFMIFYLAAL Sbjct: 119 ANIWLFFYTPQYGLLEQITGALGLPSHNWLGNPQTVLGALMVVAVWKEAGFFMIFYLAAL 178 Query: 194 QAIPPDLREAARIEGAGRWAYTRRIVLPLLMPTTLFVLINALINSVRLIDHLFILTKGGP 253 Q I P L EAA +EGA RW Y R+ PLLMPTTLFVLINALIN+ RL+DH+ ++TKGGP Sbjct: 179 QQISPVLAEAAALEGASRWQYFWRVQFPLLMPTTLFVLINALINAFRLVDHIVVMTKGGP 238 Query: 254 DNASKLILYWIWEMAFAYLDQAGAAVMTVLVLAALGLIAALQFMFFDRRIHYR 306 DNAS L+LY+I+E+ FA+ D + AA +TV++LA LGLIA ++F DRR HY+ Sbjct: 239 DNASSLLLYYIYEVGFAFWDSSYAAALTVVLLALLGLIALVKFRVLDRRTHYQ 291 >gi|300309613|ref|YP_003773705.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 311 Score = 126 bits (317), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/263 (30%), Positives = 140/263 (53%), Gaps = 9/263 (3%) Query: 26 LTPSLILLTLFAFYPMLATLWSSFHSRGTARRPSVFNGIENYRDLLSDPTFWQVAGNNLL 85 L P+ ++ ++ YP+L T++ SF S P F G+ NY +L PTF+ NN+L Sbjct: 42 LAPACVMTLVYVLYPILYTIYLSFFSWDGMTEPR-FVGLANYVELFHAPTFYTALKNNVL 100 Query: 86 YAGVTVPVSIALALGMALWANARIGGRXHRGLVRTAFFTPTMLPMIAAANLWLFFYTPGL 145 + + ++ + L +AL+ N ++ G +V++ FF P +L + ++ +FY P Sbjct: 101 WL-LMFLLAPPMGLAIALYLNQKVIGMR---VVKSLFFAPFVLSGVVVGLMYSWFYDPSF 156 Query: 146 GLLDHVTALFGIGPTNWLGQPGTALWSVMAVTIWKESGFFMIFYLAALQAIPPDLREAAR 205 GLL + LFG G LG A + ++ +W ++ + MI +L L A+ D EAAR Sbjct: 157 GLL---SLLFGQG-VPVLGDARYATFGIIFAALWPQTAYCMILFLTGLTALNHDQVEAAR 212 Query: 206 IEGAGRWAYTRRIVLPLLMPTTLFVLINALINSVRLIDHLFILTKGGPDNASKLILYWIW 265 +EGA W R ++LP L TT + ++I ++R D + ++T GGP +S ++ Y+ + Sbjct: 213 MEGAKGWTMLRYVILPQLRSTTFMAFVVSIIGALRSFDLISVMTSGGPYESSTVLAYYAY 272 Query: 266 EMAFAYLDQAGAAVMTVLVLAAL 288 + A Y Q +A + V + A + Sbjct: 273 DQAIKYYRQGYSAAVAVTLFAIM 295 >gi|300313088|ref|YP_003777180.1| sn-glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 126 bits (316), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/287 (28%), Positives = 151/287 (52%), Gaps = 15/287 (5%) Query: 25 LLTPSLILLTLFAFYPMLATLWSSFHSRGTARRPSVFNGIENYRDLLSDPTFWQVAGNNL 84 L+ P +I+ LF F+P + L+ S + S F +N++ L DPT+ + Sbjct: 16 LVAPQIIITLLFFFWPAVQALYQSMLLQDAFGGYSEFVWFDNFKTLFGDPTYLESFRTTA 75 Query: 85 LYAGVTVPVSIALALGMALWANARIGGRXHRG--LVRTAFFTPTMLPMIAAANLWLFFYT 142 +++ + +AL+L +A++A+ R RG + +T P + + LW+F + Sbjct: 76 IFSALVAFFGLALSLLLAVFAD-----RVRRGASIYKTFLIWPYAVSPVVVGVLWMFLLS 130 Query: 143 PGLGLLDHVTALFGIGPTNWLGQPGTALWSVMAVTIWKESGFFMIFYLAALQAIPPDLRE 202 P LG+L HV + G+ P +++ A+ ++ IWK+ + +F+LA LQ+IP L E Sbjct: 131 PSLGILSHVLSWLGL-PWDYMINGTHAMILIVIAAIWKQISYNFLFFLAGLQSIPKSLIE 189 Query: 203 AARIEGAGRWAYTRRIVLPLLMPTTLFVLINALINSVRLIDHLFIL----TKGGPDNASK 258 AA I+GAG IV PL+ PTT F+ + +N V F++ T GGP ++ Sbjct: 190 AAAIDGAGPVKRFFTIVFPLISPTTFFLFV---VNVVYAFFDTFVIVDATTHGGPGKDTE 246 Query: 259 LILYWIWEMAFAYLDQAGAAVMTVLVLAALGLIAALQFMFFDRRIHY 305 +++Y ++ F D G+A +V+++A + L+ +QF + ++++ Y Sbjct: 247 ILVYKVFSDGFKGGDLGGSAAQSVVLMALVILLTVVQFKYVEKKVQY 293 >gi|300313833|ref|YP_003777925.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 304 Score = 105 bits (262), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 89/294 (30%), Positives = 142/294 (48%), Gaps = 21/294 (7%) Query: 25 LLTPSLILLTLFAFYPMLATLWSSFHSRGTARRPSVFNGIENYRDLLSDP----TFWQVA 80 LL P++++ LF+ P+L TL F++ A S F G++NYR +L DP FW Sbjct: 12 LLAPAVLIYALFSALPLLDTLRLGFYTANDAGVRS-FVGLDNYRTILFDPDWSAAFWNAM 70 Query: 81 GNNLLYAGVTVPVS--IALALGMALWANARIGGRXHRGLVRTAFFTPTMLPMIAAANLWL 138 NN+ + + + + I L L G R +R L+ F PT+L ++ +W Sbjct: 71 WNNVKFFCIHMALQNPIGLLLATLFSLKGLRGARTYRTLI----FLPTLLSVVIIGFIWQ 126 Query: 139 FFYTPGLGLLDHVTALFGIGP--TNWLGQPGTALWSVMAVTIWKESGFFMIFYLAALQAI 196 +P G+ + + G+ WLGQ TAL ++ +++W+ G M+ AAL A+ Sbjct: 127 LILSPLWGVGEKLLGTVGLADWFAPWLGQESTALLTLSLISVWQYVGIPMMLIYAALLAV 186 Query: 197 PPDLREAARIEGAGRWAYTRRIVLPLLMPTTLFVLINALINSVRLIDHLFILTK--GGPD 254 P ++ EAA EGA +I LPL+ PT V I + + D ++ + GP+ Sbjct: 187 PEEVLEAAHAEGASAMRIFWQIKLPLIYPTLGLVTILTFVANFNAFDLIYSVKGALAGPN 246 Query: 255 NASKLILYWIWEMAFAYLDQ-----AGAAVMTVLVLAALGLIAALQFMFFDRRI 303 AS L+ + + F Y Q GAAV T++ L LG + A F+ RR+ Sbjct: 247 YASDLLGTYFYRTFFGYQAQIGSPTMGAAVATLMFLVILGGVGA-YFVLVQRRL 299 >gi|300312691|ref|YP_003776783.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 292 Score = 105 bits (261), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 75/270 (27%), Positives = 137/270 (50%), Gaps = 2/270 (0%) Query: 26 LTPSLILLTLFAFYPMLATLWSSFHSRGTARRPSVFNGIENYRDLLSDPTFWQVAGNNLL 85 L PSL+++ + P +A + + +R S + + N L+SD F + + Sbjct: 14 LGPSLLVMLVLGLVPTVAAINLALKNRVLRYPDSDYVWLRNLERLMSDRRFLNAIEVSAV 73 Query: 86 YAGVTVPVSIALALGMALWANARIGGRXHRGLVRTAFFTPTMLPMIAAANLWLFFYTPGL 145 + VTV ++ + + +A++ + G+ + + TP +LP ++AA +W F Y+P Sbjct: 74 WEVVTVLGAVIVGIAIAVYLFENVHGKWRQAMC-VLLITPVLLPRVSAAFIWKFMYSPLT 132 Query: 146 GLLDHVTALFGIGPTNWLGQPGTALWSVMAVTIWKESGFFMIFYLAALQAIPPDLREAAR 205 G+L + L GI T +L P AL++V V IW+ FF + L L+ +PP+ EAAR Sbjct: 133 GILGWLLGLVGIHDTAFLSDPALALYAVALVDIWQWGLFFAVIVLKLLETLPPEPLEAAR 192 Query: 206 IEGAGRWAYTRRIVLPLLMPTTLFVLINALINSVRLIDHLFILTKGGPDNASKLILYWIW 265 ++ A W I LP+L + ++ ++ S+R D ++++TKGGP A++ + + + Sbjct: 193 LDYARTWQVYAYIALPMLKGPLISLVFIKMVESLRSFDLIYVMTKGGPGVATETLDMYAY 252 Query: 266 EMAFAYLDQAG-AAVMTVLVLAALGLIAAL 294 + A+ M VL++ A LI L Sbjct: 253 AQGIGLSGKVSYASTMAVLMMIATTLIFTL 282 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.141 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 972,049 Number of extensions: 40469 Number of successful extensions: 239 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 225 Number of HSP's successfully gapped: 10 Length of query: 306 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 221 Effective length of database: 1,217,395 Effective search space: 269044295 Effective search space used: 269044295 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)