BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0047.p (169 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312389|ref|YP_003776481.1| sugar ABC transporter permease ... 203 7e-54 gi|300313087|ref|YP_003777179.1| sn-glycerol-3-phosphate ABC tra... 90 9e-20 gi|300309612|ref|YP_003773704.1| sugar ABC transporter permease ... 82 2e-17 gi|300311927|ref|YP_003776019.1| glycerol-3-phosphate ABC transp... 70 7e-14 gi|300313834|ref|YP_003777926.1| sugar ABC transporter permease ... 69 2e-13 >gi|300312389|ref|YP_003776481.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 276 Score = 203 bits (516), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 105/169 (62%), Positives = 136/169 (80%) Query: 1 VFVLVLPQLFVLPEILIVENYAMVTRLGLFDTPFGMAVPYMASAFGIFLLRQAFMQIPRE 60 +F+LVL QL V+P+ILIVENY + LGL DT + +PY ASAFGIFLLRQ F +PRE Sbjct: 108 MFMLVLLQLMVMPDILIVENYQTMNLLGLRDTILSIGLPYFASAFGIFLLRQTFKTVPRE 167 Query: 61 LEEAARIEGCGWFGVLWRVYVPAAKPVYLAYALVSVATHWNNFLWPLIVTNSPATRPLTV 120 L+EAA +EG + +L +VYVP A+P+Y+A+ LVSV+THWNNFLWPLIVTNS +RPLTV Sbjct: 168 LDEAATVEGASAWQILMQVYVPLARPIYIAFGLVSVSTHWNNFLWPLIVTNSVESRPLTV 227 Query: 121 GLSLFGAPESGVNISIISAATLVAIAPLMIGFLVFQRQFIQAFLRAGIR 169 GL +F + + GV+ SII+AATL+ APL++ FL+FQRQF+Q+F+RAGIR Sbjct: 228 GLQVFSSTDQGVDWSIITAATLMTSAPLLLAFLLFQRQFVQSFMRAGIR 276 >gi|300313087|ref|YP_003777179.1| sn-glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 283 Score = 90.1 bits (222), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 87/154 (56%), Gaps = 1/154 (0%) Query: 14 EILIVENYAMVTRLGLFDTPFGMAVPYMASAFGIFLLRQAFMQIPRELEEAARIEGCGWF 73 E+ I Y +V+ LG+ ++ G++VP +ASA FL RQ F+ +P EL EAARI+G G Sbjct: 128 EVRITPTYQVVSDLGMLNSYAGLSVPLIASATATFLFRQFFLTVPDELAEAARIDGAGPL 187 Query: 74 GVLWRVYVPAAKPVYLAYALVSVATHWNNFLWPLIVTNSPATRPLTVGL-SLFGAPESGV 132 L V P ++ +A ++ WN +LWPLI+ + P+ +G+ +L +S V Sbjct: 188 RFLKDVLWPLSRTNVIALFVIMFIYGWNQYLWPLIIATDTSMYPIGIGIKTLISGGDSAV 247 Query: 133 NISIISAATLVAIAPLMIGFLVFQRQFIQAFLRA 166 +++ A ++A+ P + +V Q+ F++ + + Sbjct: 248 EWNLVMATMILAMLPPGLVVVVMQKWFVKGLVDS 281 >gi|300309612|ref|YP_003773704.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 283 Score = 82.0 bits (201), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 86/154 (55%), Gaps = 5/154 (3%) Query: 10 FVLPEILIVENYAMVTRLGLFDTPFGMAVPY--MASAFGIFLLRQAFMQIPRELEEAARI 67 FV +IL++ + LGLF+T GM + + M + F LR Q+P E+ EAARI Sbjct: 122 FVPQQILMIPVRDLSLSLGLFNTITGMMLFHIAMQTGFCTLFLRNFIKQLPFEMIEAARI 181 Query: 68 EGCGWFGVLWRVYVPAAKPVYLAYALVSVATHWNNFLWPLIVTNSPATRPLTVGL-SLFG 126 EG + V +R+ +P +P A A++ WN++ W L++T P+TVG+ +L G Sbjct: 182 EGASEWTVFYRIVLPLIRPALAALAVLVFTFVWNDYFWALVLTQGDDVAPITVGVAALRG 241 Query: 127 APESGVNISIISAATLVAIAPLMIGFLVFQRQFI 160 + N ++SA +++A P +I F V Q+QF+ Sbjct: 242 QWTTAWN--LVSAGSILAALPSVILFFVMQKQFV 273 >gi|300311927|ref|YP_003776019.1| glycerol-3-phosphate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 298 Score = 70.5 bits (171), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 8/131 (6%) Query: 5 VLPQLFVLPEILIVENYAMVTRLGLFDTPFGMAVPYMASAFGIFLLRQAFMQIPRELEEA 64 +L L L + L + V + L +T G+++P +ASA G FL Q + IP EL EA Sbjct: 133 LLEPLRSLLQALDLSGQQAVPSISLVNTYAGLSLPLVASATGTFLFLQFYRTIPPELVEA 192 Query: 65 ARIEGCGWFGVLWRVYV----PAAKPVYLAYALVSVATHWNNFLWPLIVTNSPATRPLTV 120 ARI+G G WR YV P +K + A + + W +++WPL++T+ R +T+ Sbjct: 193 ARIDGAG----PWRFYVDILLPLSKTNFAALGAIVFISTWKDYMWPLVITSHEQMRTITL 248 Query: 121 GLSLFGAPESG 131 ++ F ESG Sbjct: 249 AMASFLPVESG 259 >gi|300313834|ref|YP_003777926.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 300 Score = 68.6 bits (166), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 3/149 (2%) Query: 23 MVTRLGLFDTPFGMAVPYMASAF--GIFLLRQAFMQIPRELEEAARIEGCGWFGVLWRVY 80 +V L L +T + + Y A + +L + QIP EL++AAR +G G + +RV Sbjct: 153 LVVALDLINTRTALVLVYTAQGLPLAVMILSEFMRQIPGELKDAARCDGVGELSIFFRVI 212 Query: 81 VPAAKPVYLAYALVSVATHWNNFLWPLIVTNSPATRPLTVGLSLFGAPESGVNISIISAA 140 +P +P A+ ++ WN+ +PLI+ TR +T+G+ F + + + + AA Sbjct: 213 LPLLRPAIATVAVFTMIPAWNDLWFPLILAPGEDTRTVTLGVQQF-IGQYATDWNSVLAA 271 Query: 141 TLVAIAPLMIGFLVFQRQFIQAFLRAGIR 169 +A+ P+++ ++ F RQ I+ ++ Sbjct: 272 LSMAVIPVLLLYMAFSRQLIRGLTSGAVK 300 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.331 0.144 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 498,627 Number of extensions: 20869 Number of successful extensions: 127 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 122 Number of HSP's successfully gapped: 8 Length of query: 169 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 90 Effective length of database: 1,245,805 Effective search space: 112122450 Effective search space used: 112122450 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 127 (53.5 bits)