BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0046.p
         (262 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309937|ref|YP_003774029.1| cAMP phosphodiesterase [Herbasp...   137   9e-34

>gi|300309937|ref|YP_003774029.1| cAMP phosphodiesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 273

 Score =  137 bits (345), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 90/266 (33%), Positives = 128/266 (48%), Gaps = 5/266 (1%)

Query: 1   MKVIQITDIHLVPDGNLLFGE-DSVTRFRHCIAHVNEHHPDADLCVITGDLTHDGDEASY 59
           M + QI+D+H+  DG   +   D+    R C+A VN      D  VITGDL   G  + Y
Sbjct: 1   MILGQISDLHIKTDGKKSYRVVDTAESLRRCVAQVNGLKQRPDALVITGDLVDFGKPSEY 60

Query: 60  RILAGCIKELKLPVRLLLGNHDERPVFRSVFPAIPVDEHG--FIQGVHDADDTRLVFLDT 117
             L   +  L +P  LL GNHDER   R+ FP     + G   I+ V +    R++ LDT
Sbjct: 61  ACLRELLAPLAMPYYLLPGNHDERNALRAAFPDHAYLQQGGERIEYVIEDHPVRIIALDT 120

Query: 118 KEAGTHEGRLCADRLAWLDRTLAEAGERAVYLFSHHPPFELDLPSMDWIRLREEADLRAL 177
                  G L    L WLD  LA+  +R   +  HHPPF   +  MD + L +   L A+
Sbjct: 121 VIPRQSGGALSPQSLQWLDEVLAQQAQRPTVIAMHHPPFTTGIGHMDDMGLADPQALEAV 180

Query: 178 VKKHGNVRYMFSGHVHRPSGGTWYGTPFATVPGTNHQHALDFTLTGPATTSMEPPAYAVL 237
           V+KH  V  +  GH+HR     + GT   T PG +HQ  LD     P+   MEPP + + 
Sbjct: 181 VRKHPQVERILCGHLHRSIQRRFGGTLATTCPGVSHQVQLDLDAQAPSCFVMEPPGFQLH 240

Query: 238 SLRDAG-VVVHYHAFMDRSQ-QFPYY 261
              +A   +V + AF+   +  +P+Y
Sbjct: 241 WWDEAARSLVSHTAFIGEFEGPYPFY 266


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.141    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 927,111
Number of extensions: 39643
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 179
Effective length of database: 1,226,865
Effective search space: 219608835
Effective search space used: 219608835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)