BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0045.p
         (718 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768...   209   9e-55

>gi|300310103|ref|YP_003774195.1| hypothetical protein Hsero_0768
           [Herbaspirillum seropedicae SmR1]
          Length = 720

 Score =  209 bits (531), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 183/574 (31%), Positives = 262/574 (45%), Gaps = 98/574 (17%)

Query: 50  CQKLVRIGLFFDGTDNNKYRDEPIQG--------HTNVVKLFNAHQDIKGEGDLKESSCF 101
           C+  +  GLFFDGT NN    E  Q         H+NV +LF+A+ D    G       F
Sbjct: 41  CKGQLFTGLFFDGTGNNDKWVEDGQTKNQRQRNKHSNVARLFDAYIDDPDNG------FF 94

Query: 102 RFYVPGVGTRFPE-NQEWKETQD--GKAMGKGGQARILYGILQVYNAVYQ--------AF 150
           R Y+ GVGT F E    +K   D  G   G  G  RI +GI  + NAVY         + 
Sbjct: 95  RVYMQGVGTPFAEIGDTFKLGTDIGGSGFGYMGADRINWGITSLLNAVYSYATGGSLFSG 154

Query: 151 NEGRDLYEPFQL----TAKLKSYARDVE------QNYDKEYPGNVRRQQWFHQLRDELND 200
           NE RDL     +       + +   D +        Y    P  VRR   +     +L  
Sbjct: 155 NEQRDLVNLMSMQMLQNGNVNAMPPDWQIGEWTVPGYLTTAPEKVRRLAMYKTFMQKLAT 214

Query: 201 RLQASRNIILQPRIPQIRVAVFGFSRGAIEARSFCYWLSAALE---GKSSLAGMPIEINF 257
            +++S     Q ++ QI V+VFGFSRGA EAR+ C+WL        G   LAG+PI I F
Sbjct: 215 AVKSS-----QRKVVQINVSVFGFSRGAAEARACCHWLHELFTPSGGAFELAGIPIRIGF 269

Query: 258 LGLFDSVASVGLPNSAAQTTPFRFIDGHFSWAAETLAPLPSLVKQTVHYIAAHEQRMNFP 317
           LG+FD+VA+VG+ +     TP  F  GH +WA +T + +P  V+Q  H++A HEQR +FP
Sbjct: 270 LGVFDTVAAVGIGD----VTPVTF--GHMAWADKTQS-VPPAVEQCAHFVALHEQRASFP 322

Query: 318 VTRVTGNNVREVLYPGVHSDVGGGYCPKAQGRGM-TVGQ--MISQVPLLHMHRAARLAGV 374
           +   TG     V YPG+HSD+GGGY P  QG+ M + G+   +SQ+PL+ MH  A  AGV
Sbjct: 323 LESSTGWT--NVGYPGMHSDIGGGYFPGEQGKSMPSWGKSPHLSQIPLIDMHFTALKAGV 380

Query: 375 PLVGYSVMASD--LRADYALSPDLANNWNAYMAAWRVAGPHQQPLHDPESATAQSSDGNL 432
           PL     + +D  L A YA  P L  ++N ++A                           
Sbjct: 381 PLWTTGEINADPSLSASYATDPRLIKSYNDWLA--------------------------- 413

Query: 433 KPESGGSRAATYEEQIEKHMWLYYRFRYRWVDRMAQLPACQR----ATLQEQQDMISYDQ 488
              + G +A +  E  E H   Y R+R    +    L   +R    A   +++DM+  D 
Sbjct: 414 ---TNGIKAGSIREYTEAHTRQYLRWRGSLHEGKGGLMLGKRFYQDAGTSDKKDMLEADV 470

Query: 489 LFKGDMELLRERANGGRPRRFRENGDEIKLFIPGNSHVANQQQLLRADTRVRPDASEALA 548
                +   RERA+    +R    G   + ++     V+    +L   ++ R  A E   
Sbjct: 471 ELGKMIRDWRERASLNLDQRM---GQMAQKYV---RRVSPLTGMLMGPSKDRLTAQEKKF 524

Query: 549 LQVFEEQKGLLKAEGIALLEEQVHDSLAGFHMGG 582
             +      +  A  + L E+ VHDS AGF + G
Sbjct: 525 YDIMCSDP-MPPAACVTLFEDYVHDSRAGFRVMG 557


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,331,808
Number of extensions: 101176
Number of successful extensions: 247
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 1
Length of query: 718
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 626
Effective length of database: 1,184,250
Effective search space: 741340500
Effective search space used: 741340500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)