BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0043.p
         (300 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310099|ref|YP_003774191.1| hypothetical protein Hsero_0764...    66   3e-12

>gi|300310099|ref|YP_003774191.1| hypothetical protein Hsero_0764
           [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 89/196 (45%), Gaps = 16/196 (8%)

Query: 45  DQKWGAALLWQQSQAVNVHC--------VRSLYTGSRLEALEECAPFLVIIE----PEK- 91
           D+  GA LL   +QA   H           SL+ G R EAL E AP L+ +     P + 
Sbjct: 20  DRGHGAYLLLDSAQAEGSHLKLQAMRLPYASLFDGKREEALPEIAPLLISLSGLDAPRRE 79

Query: 92  RLSALQGLLSRTDHKPMLTFVQSPLDLFALQRHLVRFSQIETPDTLVFPLRFADSICLPE 151
           RL++    L+ +   P L++ +SPL L A   HL  F Q+   D     +R+ D+  LP 
Sbjct: 80  RLASWISQLAFS--APCLSWYESPLPLQAFAAHLRNFHQVGLSDGQAMMMRWYDTRILPI 137

Query: 152 ILDVFTLEQRAAILSGVTAWHYVDRRGGVVTIAGTCNDADLYVTPMYGEIDRIPFSDSQY 211
                T EQR+    G+ +  YVDR G   TI    ++A     P   +   +   D Q+
Sbjct: 138 WAQALTPEQRSLFTGGMFSIAYVDRFGEAKTIH-QASEAGPPSAPPPLDQPLVTLDDQQF 196

Query: 212 VQLFDSSEADGILNAL 227
             L D+ + D ++N L
Sbjct: 197 GLLVDAGDLDTLVNHL 212


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 826,298
Number of extensions: 30984
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,217,395
Effective search space: 261739925
Effective search space used: 261739925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)