BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0042.p
         (340 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate A...   582   e-167
gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate A...   245   4e-66

>gi|300311839|ref|YP_003775931.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 341

 Score =  582 bits (1500), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 284/338 (84%), Positives = 304/338 (89%), Gaps = 2/338 (0%)

Query: 3   RRHFSKLMTAATLGLSMLAASIPARAEAPVVRLSHGYGLLYLPLMVIRDQGLIEKHAKAA 62
           RR F+ LM A+ L LS ++ +  A AEA  VR+SHGYGLLYLPLMVIRDQ L+EKHAKA 
Sbjct: 6   RRTFTSLMIASALALSGVSGT--AHAEAQEVRISHGYGLLYLPLMVIRDQNLVEKHAKAM 63

Query: 63  GLGDVKTNWVLLDGGNVINDAMLAGNLDIAGTGAPGFITLWSKARGIPRSEVTGLGALST 122
           GLG+VKT WVLLDGGNVINDAMLAGNLDIAGTGAPGF+TLWSKA GIPRSEV GLGALST
Sbjct: 64  GLGEVKTKWVLLDGGNVINDAMLAGNLDIAGTGAPGFVTLWSKAHGIPRSEVVGLGALST 123

Query: 123 SPLWLNTNNPNVKSLKDFTSKDKIAIPGIKTSLSAVLLQMAVAKTFGIENYAKLDPLTVS 182
           SPLWLNTNNPNVKSLKDFT KDKIAIPGIKTSLSAVLLQMA AKTFGIENYAKLDPLTVS
Sbjct: 124 SPLWLNTNNPNVKSLKDFTPKDKIAIPGIKTSLSAVLLQMAAAKTFGIENYAKLDPLTVS 183

Query: 183 LSHPEALGSLLSGKTEITGHFTSPPFSYQEVKDPKIRRVLNSSDVLGHITIDVVFALKQF 242
           LSHPEA+ SL+SGKTEIT HFTSPPFSYQE K P I RVLNS+DVLGHITIDVVFALK F
Sbjct: 184 LSHPEAMASLVSGKTEITAHFTSPPFSYQEAKAPGITRVLNSTDVLGHITIDVVFALKSF 243

Query: 243 TEKNPKLTQAFMEAQEEANAYIAKNRKGAAETFLRVSKMKLTQDEVEKMLADPDTQFTTT 302
           T+KNPKLTQAFM AQEEANAYIAKNRKGAAE FLRVSK+KL Q+EVE+MLADP T+FT+T
Sbjct: 244 TDKNPKLTQAFMAAQEEANAYIAKNRKGAAEIFLRVSKLKLPQEEVEQMLADPGTEFTST 303

Query: 303 PEDIMQYVVFMDKAGTIKTKPAVWSDLFVPAFKTRKGS 340
           P DIMQYVVFM KAGTIKTKPAVW ++FVPAFK RKGS
Sbjct: 304 PVDIMQYVVFMSKAGTIKTKPAVWHEMFVPAFKERKGS 341


>gi|300309403|ref|YP_003773495.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 342

 Score =  245 bits (626), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 129/322 (40%), Positives = 201/322 (62%), Gaps = 6/322 (1%)

Query: 21  AASIPARAEAPVVRLSHGYGLLYLPLMVIRDQGLIEKHAKAAGLGDVKTNWVLLDGGNVI 80
            A + ARAE  + R++  +G++YL L V +DQ LIEKH KAAG+ D+K  W+ L GG+ I
Sbjct: 25  GAPLMARAEGQL-RIAEQFGIVYLLLNVAQDQQLIEKHGKAAGV-DIKVEWLKLSGGSAI 82

Query: 81  NDAMLAGNLDIAGTGAPGFITLWSKARGIPRSEVTGLGALSTSPLWLNTNNPNVKSLKDF 140
           NDA+L+G++DIAG G    +T+W +  G  R  V G  +L   P +L +NNP VK++ DF
Sbjct: 83  NDALLSGSVDIAGAGVGPLLTIWDRTYG--RQNVRGAASLGNFPYYLVSNNPKVKTIADF 140

Query: 141 TSKDKIAIPGIKTSLSAVLLQMAVAKTFGIENYAKLDPLTVSLSHPEALGSLLSGKTEIT 200
           + KD+IA+P +  S+ + +LQ+A AK +G   Y +LD +++++ HP+A  +++SG TEIT
Sbjct: 141 SDKDRIALPAVGVSVQSRVLQLASAKLWGDAQYNRLDKISIAVPHPDATAAIISGGTEIT 200

Query: 201 GHFTSPPFSYQEVK-DPKIRRVLNSSDVLGH-ITIDVVFALKQFTEKNPKLTQAFMEAQE 258
           GHF +PPF  QE+  +P    VL S DVLG   +  V++A ++F + NPK  +AF++A E
Sbjct: 201 GHFGNPPFQEQELAGNPNAHIVLKSYDVLGGPSSATVLYATEKFRKDNPKTYRAFLDALE 260

Query: 259 EANAYIAKNRKGAAETFLRVSKMKLTQDEVEKMLADPDTQFTTTPEDIMQYVVFMDKAGT 318
           E  ++I  N   AA+ +L+V+K    +  + +++ +P+ QF   P++      FM + G 
Sbjct: 261 ETASFIRANPDKAADIYLKVNKGNTDRKLLLQIIKNPEVQFKIAPQNTYGLAEFMHRVGA 320

Query: 319 IKTKPAVWSDLFVPAFKTRKGS 340
           IK KPA   D F      + GS
Sbjct: 321 IKNKPASVKDYFFDDPHVQGGS 342


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,034,029
Number of extensions: 42196
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,212,660
Effective search space: 308015640
Effective search space used: 308015640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)