BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0041.p (290 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311840|ref|YP_003775932.1| nitrate/sulfonate/bicarbonate A... 479 e-136 gi|300309401|ref|YP_003773493.1| nitrate/sulfonate/bicarbonate A... 333 1e-92 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 90 2e-19 gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte... 90 3e-19 gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 87 2e-18 >gi|300311840|ref|YP_003775932.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 289 Score = 479 bits (1232), Expect = e-136, Method: Compositional matrix adjust. Identities = 247/283 (87%), Positives = 269/283 (95%) Query: 8 FVRPEIIVEPNRNAVAEVQRPLSAFEAIYRISWIRKTAILLVLALVWEIYGRWLDNSLLF 67 FVRPEI+V+PN +A AEVQRPLSAFE++YR+ W+RKT ILLVLA +WE+YGRWLDN+LLF Sbjct: 7 FVRPEILVDPNPHATAEVQRPLSAFESLYRMGWLRKTVILLVLAAIWEVYGRWLDNALLF 66 Query: 68 PSFSETLHAFMSGISSGVLLQRAAVSLQTLLIGYSLGILLAGLLTTLAISSRIGNDFLET 127 PSFSET+ AF+SGI SGVLLQRAAVS+QTLL+GY LGILLAGLLTT+AISSRIGND LET Sbjct: 67 PSFSETVQAFLSGIGSGVLLQRAAVSMQTLLVGYGLGILLAGLLTTVAISSRIGNDLLET 126 Query: 128 LTSMFNPLPAIALLPLALIWFGLGTGSIIFVLVHSVLWAVALNTHAGFRSVSATMRMVGQ 187 LTSMFNPLPAIALLPLALIWFGLGTGSIIFVLVHSVLWAVALNTH GFR+VS T+RMVGQ Sbjct: 127 LTSMFNPLPAIALLPLALIWFGLGTGSIIFVLVHSVLWAVALNTHGGFRAVSNTLRMVGQ 186 Query: 188 NYGLRRFALVRYILIPAAFPSILTGLKIGWAFAWRTLIAAELVFGVSSGTGGLGWYIFEN 247 NYGLRRF+LV+ ILIPAAFPSILTGLK+GWAFAWRTLIAAELVFGVSSG GGLGWYIFEN Sbjct: 187 NYGLRRFSLVKSILIPAAFPSILTGLKVGWAFAWRTLIAAELVFGVSSGAGGLGWYIFEN 246 Query: 248 RNQLETANVFSGLFFVIIIGLFVENMIFAKIEKRTIRRWGMQH 290 RNQLETANVFSGLFFVIIIGL VEN+IFA+IEKRTIRRWGMQH Sbjct: 247 RNQLETANVFSGLFFVIIIGLVVENLIFAQIEKRTIRRWGMQH 289 >gi|300309401|ref|YP_003773493.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 288 Score = 333 bits (853), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 166/266 (62%), Positives = 206/266 (77%) Query: 25 VQRPLSAFEAIYRISWIRKTAILLVLALVWEIYGRWLDNSLLFPSFSETLHAFMSGISSG 84 +QR S + +++ W+RK AILL+LALVWE RW +N LL PSF +T AF+ G+ SG Sbjct: 23 LQRQFSLPQRLWQQGWVRKGAILLLLALVWEGVARWQNNDLLLPSFLQTAQAFIDGLRSG 82 Query: 85 VLLQRAAVSLQTLLIGYSLGILLAGLLTTLAISSRIGNDFLETLTSMFNPLPAIALLPLA 144 L + +SLQ LL Y LGI+ A LTTLA+S++ G D L TLTSMFNPLPAIALLP+A Sbjct: 83 ELFGKTWLSLQVLLKAYVLGIVAAFALTTLAVSTQFGRDLLGTLTSMFNPLPAIALLPIA 142 Query: 145 LIWFGLGTGSIIFVLVHSVLWAVALNTHAGFRSVSATMRMVGQNYGLRRFALVRYILIPA 204 L+WFGLG GS+IFVLVHSVLWA+A+NT+AGF VS T+RM G+NYGLR V +L+PA Sbjct: 143 LLWFGLGQGSLIFVLVHSVLWALAVNTYAGFLGVSDTLRMAGRNYGLRGLGFVLQVLVPA 202 Query: 205 AFPSILTGLKIGWAFAWRTLIAAELVFGVSSGTGGLGWYIFENRNQLETANVFSGLFFVI 264 A PSIL GL+IGWAFAWRTLIAAELVFG +SG GGLGWYIF+NRN+L T VF+GL VI Sbjct: 203 ALPSILAGLRIGWAFAWRTLIAAELVFGATSGKGGLGWYIFQNRNELYTDKVFAGLAMVI 262 Query: 265 IIGLFVENMIFAKIEKRTIRRWGMQH 290 +IGL VEN++F +E+ T+++WGMQ Sbjct: 263 LIGLLVENLVFNTLERVTVKKWGMQR 288 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/243 (27%), Positives = 122/243 (50%), Gaps = 8/243 (3%) Query: 29 LSAFEAIYRISWIRKTAILLVLALVWEIYGRWLDNSLLFPSFSETLHAFMSGISSGVLLQ 88 ++ +E R WI +L W + +W++ + + ++++ SG L+ Sbjct: 20 IALWEGASRAGWINPQ----ILPSPWAVLRKWVEYATPLKPYDPEAGSWLAWAFSGELVM 75 Query: 89 RAAVSLQTLLIGYSLGILLAGLLTTLAISSRIGNDFLETLTSMFNPLPAIALLPLALIWF 148 A SL ++ G+ +G LA L L SS+ + + P+P IA +PLA++WF Sbjct: 76 DAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLAILWF 135 Query: 149 GLGTGSIIFVLVHSVLWAVALNTHAGFRSVSATMRMVGQNYGLRRFALVRYILIPAAFPS 208 GLG +F++ + V +NT AG R V + +N G + L +++PAA P Sbjct: 136 GLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPAAVPY 195 Query: 209 ILTGLKIGWAFAWRTLIAAELVFGVSSGTGGLGWYIFENRNQLETANVFSGLFFVIIIGL 268 IL+G++IG A+ +I AE++ + + GLG+ I E R + + +G+ + ++GL Sbjct: 196 ILSGVRIGIGTAFIVVIVAEMI----AVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGL 251 Query: 269 FVE 271 ++ Sbjct: 252 AID 254 >gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 279 Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 9/235 (3%) Query: 54 WEIYGR--WLDNSLLFPSFSETLHAFMSGISSGVLLQRAAVSLQTLLIGYSLGILLAGLL 111 WE+ + WL + +L P L A +SG L + AVS G+++G L +L Sbjct: 47 WEVAAQAGWLSSRIL-PEPLAVLKAAWELSASGELWRHLAVSSGRAASGFAVGAGLGLIL 105 Query: 112 TTLAISSRIGNDFLETLTSMFNPLPAIALLPLALIWFGLGTGSIIFVLVHSVLWAVALNT 171 L+ S R L+T M +PA+AL+PL ++WFG+ + +F++ V + V LNT Sbjct: 106 GLLSGSLRSAELLLDTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVGVFFPVYLNT 165 Query: 172 HAGFRSVSATMRMVGQNYGLRRFALVRYILIPAAFPSILTGLKIGWAFAWRTLIAAELVF 231 G RSV + + ++YGL + L R +++P A P+IL GL+ W LI AE + Sbjct: 166 FHGIRSVDQGLIEMAKSYGLSGWPLYRDVILPGALPAILVGLRFALGLVWVLLIVAETI- 224 Query: 232 GVSSGTGGLGWYIFENRNQLETANVFSGLFFVIIIGLFVENMIFAKIEKRTIRRW 286 S G+G+ R L+T V G+ ++G + A+ +R RW Sbjct: 225 ---SAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADTA--ARWLERFWLRW 274 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/283 (28%), Positives = 124/283 (43%), Gaps = 17/283 (6%) Query: 17 PNRNAVAEVQRPLSAFEAIYR----ISWIRKTAILLVLALVWEIYGRW-LDNSLLFPSFS 71 P + A R + YR WI A LL++ E R L + L P S Sbjct: 2 PTSTSTARTHRRGWPHDDAYRPGRFTGWIVPLAFLLLV----EAGARLELIPARLLPPPS 57 Query: 72 ETLHAFMSGISSGVLLQRAAVSLQTLLIGYSLGILLAGLLTTLAISSRIGNDFLETLTSM 131 E H S G LL A SL + G+ +G LA L L SR LE Sbjct: 58 ELAHTLWSLAQRGELLPHIAASLARVAAGFVIGSALAVALGLLVGISRRAEALLEPSFQA 117 Query: 132 FNPLPAIALLPLALIWFGLGTGSIIFVLVHSVLWAVALNTHAGFRSVSATMRMVGQNYGL 191 +P++A +PL L+W G+ + ++ + V LN AG R + + VG GL Sbjct: 118 LRAIPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGL 177 Query: 192 RRFALVRYILIPAAFPSILTGLKIGWAFAWRTLIAAELVFGVSSGTGGLGWYIFENRNQL 251 AL+ +IL+PA+ P + GL+ G + AW L+AAEL+ + T G+G+ + + R Sbjct: 178 NTQALIGHILLPASLPYLFAGLRGGLSLAWMFLVAAELI----AATKGVGYLLSDGRESS 233 Query: 252 ETANVFSGLFFVIIIGLFVENMIFAKIEK----RTIRRWGMQH 290 V + + + ++G + ++ A +K R RR Q Sbjct: 234 RPDLVLAAILILALLGKLSDGLLRAVEQKSLGWREARRQSSQQ 276 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.141 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 756,908 Number of extensions: 27703 Number of successful extensions: 143 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 14 Length of query: 290 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 206 Effective length of database: 1,222,130 Effective search space: 251758780 Effective search space used: 251758780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)