BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0038.p
         (214 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311843|ref|YP_003775935.1| transmembrane sensor histidine ...   261   2e-71

>gi|300311843|ref|YP_003775935.1| transmembrane sensor histidine
           kinase transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 468

 Score =  261 bits (668), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 123/163 (75%), Positives = 140/163 (85%)

Query: 2   IVAGRSLYTRLVMRVGIVLAISSAVLLIAIWISTQLAANEAYDRILSGSALQIAENTWYQ 61
           ++AGRSLYTRLV+RVG VL +S+A LLIAIWISTQ AA EAYDRIL+GSALQIAENTWY 
Sbjct: 8   VIAGRSLYTRLVIRVGAVLLVSAAALLIAIWISTQFAAREAYDRILAGSALQIAENTWYD 67

Query: 62  NGAVNVDVPLAAFSMLTAGDQVFYVVIDPDGRTVAGDPDFKPEIPWNKLEEGPLLQDGAY 121
           +G VNVDVPLAA SML  GD   Y V DP GR +AGD +F+PEIPW +LE+GPLL+DG Y
Sbjct: 68  HGEVNVDVPLAALSMLGTGDHAIYAVFDPRGRVIAGDAEFRPEIPWQELEQGPLLRDGQY 127

Query: 122 LDTPVRMAVIGRRMPVAGAHPWAVIVLAQTNNARMSFAKSVGT 164
           L TPVRMA+IGRRMPV G HPWAVIVLAQTNNARMSFA+S+G+
Sbjct: 128 LGTPVRMAIIGRRMPVEGPHPWAVIVLAQTNNARMSFAQSLGS 170


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 690,079
Number of extensions: 29468
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 133
Effective length of database: 1,236,335
Effective search space: 164432555
Effective search space used: 164432555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)