BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0037.p
         (370 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313535|ref|YP_003777627.1| amino acid ABC transporter/sign...    56   5e-09

>gi|300313535|ref|YP_003777627.1| amino acid ABC transporter/signal
           transduction system periplasmic
           protein/domain-containing protein [Herbaspirillum
           seropedicae SmR1]
          Length = 260

 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 7/158 (4%)

Query: 61  GTLRASINLGNPVLASVDPNTGKPVGVSVDLAAELARRLGVPLQLVAVKSAGASVENIEQ 120
           GTLR ++    P   SVD +  KP G+ +D+A  +A++LGV ++L+ V SA   +  +  
Sbjct: 34  GTLRVAVPADFPPFGSVDADL-KPQGLDIDVATLIAKKLGVKVELIPVSSAN-RIPYLTT 91

Query: 121 DKAD--IGFFAVDPKRAQEISFTGPYVLIEGYYAVRADSPITTNTQVDQPGITVAVGNGS 178
            K D  I     + +R + I F+  Y     +  V   + ++  +  D  G T+AV  GS
Sbjct: 92  KKVDLVISSMGKNAEREKVIDFSAAYA--PFFNGVFGPADLSVKSAADLAGKTIAVTRGS 149

Query: 179 AYDLFLTREL-KSATIVRIPTSPAVVQGFLDQNLSVAA 215
             DL LT+ +  SAT+ R   + + +  FL   + + A
Sbjct: 150 VEDLELTKIVPASATVKRYEDNNSTISSFLSGQVQLVA 187


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,095,964
Number of extensions: 44126
Number of successful extensions: 209
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 3
Length of query: 370
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 283
Effective length of database: 1,207,925
Effective search space: 341842775
Effective search space used: 341842775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)