BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0033.p (496 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310534|ref|YP_003774626.1| transmembrane sensor histidine ... 136 3e-33 gi|300311886|ref|YP_003775978.1| multi-sensor signal transductio... 135 8e-33 gi|300311282|ref|YP_003775374.1| transmembrane sensor histidine ... 105 7e-24 gi|300312939|ref|YP_003777031.1| transmembrane nitrate/nitrite s... 85 1e-17 gi|300312318|ref|YP_003776410.1| diguanylate cyclase with PAS/PA... 84 3e-17 >gi|300310534|ref|YP_003774626.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 677 Score = 136 bits (343), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 89/252 (35%), Positives = 139/252 (55%), Gaps = 19/252 (7%) Query: 256 GSHVDITERKQSEENL-----------LALTRELRDVSRELARVEEAERRRFAQELHDTI 304 G DITERKQ+E+ L + T LR+++ L V E E+R A+ELHD + Sbjct: 425 GISTDITERKQAEDELRQRESQLEKTVIQRTALLRELTNHLETVREEEKRAIARELHDNM 484 Query: 305 GSALAALSINMTIMSGEISGTNDHPSAGMAARLKDSIVLLDDTTDAVRRLMAELRPPVLD 364 G++L ALS+++ + + D A R++ L+ RR+ ELRP LD Sbjct: 485 GASLTALSMHLEGVYQILP--PDEKWADRKVRMQG---LMKSLVATTRRIQTELRPNTLD 539 Query: 365 DYGLEAALRWQCELFAERSGFRFTVDVYGIDDRLEPELEISLFRIAQGAITNIAKHARAT 424 +GL+AA+ Q + ER+G + D + E+EI+++R+ Q + N+ KHA+A+ Sbjct: 540 LFGLKAAISEQLDELHERTGIACHASLPDEDVEVGHEMEIAIYRMLQEMLNNVTKHAKAS 599 Query: 425 NVEVMLNILPTSVTLTIMDDGVGFVLNKQRDHKLKPTWGLVSMRERAQALGGHLKIISEP 484 V+V+L+I V LT+ DDGVG ++ +HK T+GL +RERA GG + I S P Sbjct: 600 KVDVILDIDEDHVALTVRDDGVGIPEERRDNHK---TYGLRGLRERATFFGGEVDIRSTP 656 Query: 485 GKGTCIEVAVEL 496 GKG I +++ + Sbjct: 657 GKGALITISLPI 668 >gi|300311886|ref|YP_003775978.1| multi-sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 135 bits (340), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 141/243 (58%), Gaps = 11/243 (4%) Query: 250 KAILLQGSHVDITERKQSEENL-LALTRELRDVSRELARVEEAERRRFAQELHDTIGSAL 308 K ++ G +D+TER+QS +L LA+ R+ + +S + V+E ER+ A+ LHD +G +L Sbjct: 229 KGDMVAGLAIDVTEREQSRRDLELAIQRQ-QLLSSRVIEVQERERQHLARGLHDDVGQSL 287 Query: 309 AALSINMTIMSGEISGTNDHPSAGMAARLKDSIVLLDDTTDAVRRLMAELRPPVLDDYGL 368 AL IN+ + G+ + PS L++ I ++ VR L +LRPP LD+ GL Sbjct: 288 TALKINLETIKK--MGSLEGPS------LQNGIDIVTAVLAQVRSLSLDLRPPQLDNLGL 339 Query: 369 EAALRWQCELFAERSGFRFTVDVYGIDDRLEPELEISLFRIAQGAITNIAKHARATNVEV 428 AALR E ++ + + G D++L ++E + FRI Q A+TNI +HAR N+ V Sbjct: 340 IAALRSYVEQKSKLANVNGWFESSGHDEQLHHDIENTAFRIVQEAVTNILRHARCQNIWV 399 Query: 429 MLNILPTSVTLTIMDDGVGFVLNKQRDHKLKPT-WGLVSMRERAQALGGHLKIISEPGKG 487 ++ V L+I DDG GF + + R + + T +GL++M ERA +GG ++I S PG G Sbjct: 400 KIDRQHDQVYLSIRDDGRGFDIERARSNAISGTSFGLLNMEERAVLVGGSMEITSAPGAG 459 Query: 488 TCI 490 T I Sbjct: 460 TEI 462 >gi|300311282|ref|YP_003775374.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 464 Score = 105 bits (263), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 8/223 (3%) Query: 277 ELRDVSRELARVEEAERRRFAQELHDTIGSALAALSINMTIMSGEISGTNDHPSAGMAAR 336 +LR +++ + R +E ER R +++LHD I L ++ + + ++GT + + A Sbjct: 234 KLRQLAQRVVRSQEEERARLSRDLHDGISQWLVSIKLQIEAALVRLNGTPEQAATARAG- 292 Query: 337 LKDSIVLLDDTTDAVRRLMAELRPPVLDDYGLEAALRWQCELFAERSG----FRFTVDVY 392 + + ++ VRR+ +LRP +LDD GL AAL C + + +G F Sbjct: 293 FEKTATQINGVLAEVRRISHDLRPAILDDLGLAAALEHLCGEWRDAAGAGVEIVFENQAQ 352 Query: 393 GIDDRLEPEL-EISLFRIAQGAITNIAKHARATNVEVMLNILPTSVTLTIMDDGVGFVLN 451 D P++ LFRIAQ A+TNIA+HA A+ ++V L + L + D+G GF L Sbjct: 353 ADDGATLPDVVNTVLFRIAQEALTNIARHAGASRIKVRLYQGHNLLMLQVQDNGHGFDLG 412 Query: 452 KQRDHKLKPTWGLVSMRERAQALGGHLKIISEPGKGTCIEVAV 494 + DH + GL +MRER +A+GG L I S P GT I + Sbjct: 413 QVDDHS-RHGIGLRNMRERIEAVGGELGIDSSPA-GTSISAVI 453 >gi|300312939|ref|YP_003777031.1| transmembrane nitrate/nitrite sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 650 Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 108/216 (50%), Gaps = 6/216 (2%) Query: 279 RDVSRELARVEEAERRRFAQELHDTIGSALAALSINMTIMSGEISGTNDHPSAGMAARLK 338 R ++RE ER AQ LHD+I L L++ + ++ ++ +A L+ Sbjct: 433 RLIAREKEFAIANERNLLAQGLHDSIAQGLNFLNLQVQMLEDSLARDRLDEIRDIAPLLR 492 Query: 339 DSIVLLDDTTDAVRRLMAELRPPVLDDYGLEAALRWQCELFAERSGFRFTVDVYGIDDRL 398 + + + VR L+ R L D L++ +R + +SG + + + G L Sbjct: 493 TGV---QENYEDVRELLLNFRTR-LQDSNLDSEMRKALDKLQRQSGLQGQITLTGDGPPL 548 Query: 399 EPELEISLFRIAQGAITNIAKHARATNVEVMLNILPTSVTLTIMDDGVGFVLNKQRDHKL 458 PE ++ + I Q A++NI KHARA V++ ++ +T+ DDG GF L R L Sbjct: 549 APEQQLQVLFILQEALSNIRKHARAQQVQISVDN-RQDFRMTVSDDGHGFTLESARAKGL 607 Query: 459 KPTWGLVSMRERAQALGGHLKIISEPGKGTCIEVAV 494 + GL M+ERA+ LG +L+I S+PG GT I + + Sbjct: 608 EHV-GLRIMQERAERLGANLEIDSQPGHGTRIALTL 642 >gi|300312318|ref|YP_003776410.1| diguanylate cyclase with PAS/PAC sensor protein [Herbaspirillum seropedicae SmR1] Length = 611 Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 77/139 (55%), Gaps = 1/139 (0%) Query: 148 QLKLAVSASNTGLWNWNLRTDQFYFSPEWKRQIGYADHEIDDGMEEWTARLHPDDVERAV 207 ++ LA+ S TG+W+ N T + Y+S WK +GY D E+ + + R+HPDD+ Sbjct: 182 RMALAIEGSGTGIWDRNAVTGEMYYSRGWKAILGYEDWELSSHLADAYQRIHPDDLAYVQ 241 Query: 208 TLTRAYLASPQESLEIEYRMRHRDGTFRWMLSRSMAML-DENDKAILLQGSHVDITERKQ 266 R + + + E+E+R+R +DG+++W+ SR + D A+ + G+ DITE K+ Sbjct: 242 QTIRQHFEARSDHYEVEHRIRCQDGSYKWISSRGKVVARDAQGNALRMIGTTTDITEIKR 301 Query: 267 SEENLLALTRELRDVSREL 285 E L +R L ++ E+ Sbjct: 302 LTEKLGKSSRMLDYLTSEI 320 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,370,094 Number of extensions: 51870 Number of successful extensions: 196 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 186 Number of HSP's successfully gapped: 7 Length of query: 496 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 407 Effective length of database: 1,198,455 Effective search space: 487771185 Effective search space used: 487771185 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)