BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0032.p (216 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311885|ref|YP_003775977.1| LuxR family two component respo... 189 2e-49 gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regula... 134 5e-33 gi|300312077|ref|YP_003776169.1| response regulator containing a... 132 2e-32 gi|300310532|ref|YP_003774624.1| virulence regulator protein [He... 119 2e-28 gi|300311281|ref|YP_003775373.1| LuxR family response regulator ... 118 4e-28 >gi|300311885|ref|YP_003775977.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 189 bits (479), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 89/210 (42%), Positives = 146/210 (69%), Gaps = 1/210 (0%) Query: 6 RIYIADDHTIVRDGLAVMLQVHSDITVVGSGSDGRQAVKEIEQLHPDVVIMDIAMPNLNG 65 RI +ADDH +VR G+ +L + VVG SDG + ++ I QL PD+V++DIAM +NG Sbjct: 4 RIMLADDHALVRSGIKALLTAMPGVEVVGEASDGAEVIEMIPQLKPDLVLLDIAMKGMNG 63 Query: 66 IEAALLLRDVAPAVKTIMLSMYATKEHIFRALQAGARGYLLKNSAGSELVNAIRIVQSGQ 125 +EA LR P ++ +MLSMY ++E++ +AL AGA GYL K+SA +EL A+ V+ G+ Sbjct: 64 LEALRRLRGEYPTIRFLMLSMYGSEEYVMQALNAGANGYLFKDSAATELEKALYEVKHGR 123 Query: 126 RYLSQKISDAVVDDYLLESRAAG-PLDALSTREREVLQLVAEGHSSAQVAAMLSLSPKSI 184 +YL IS +D+Y+ G P++ L+ R+RE+LQL+AEG+++ ++A L++S K+I Sbjct: 124 QYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREILQLIAEGNNTKEIAYQLNVSAKTI 183 Query: 185 ETYRSRLMQKIGVSDLPSLVKFSIHHGLIS 214 ET+R++LM+++ + D+P LV+++I G+ + Sbjct: 184 ETHRAQLMERLDIRDVPGLVRYAIRTGIAT 213 >gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 219 Score = 134 bits (338), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 76/213 (35%), Positives = 120/213 (56%), Gaps = 5/213 (2%) Query: 5 IRIYIADDHTIVRDGLAVMLQVHSDITVVGSGSDGRQAVKEIEQLHPDVVIMDIAMPNLN 64 IRI + DDHT+ R G+ ++LQ H DI VVG DG VK QL PDVV+MD+ MP L+ Sbjct: 3 IRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPGLS 62 Query: 65 GIEAALLLRDVAPAVKTIMLSMYATKEHIFRALQAGARGYLLKNSAGSELVNAIRIVQSG 124 G+EA L+ P +MLS+ + + AL GARGYLLKN LV +I+ +G Sbjct: 63 GLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAAAG 122 Query: 125 QRYLSQKISDAVVDDYLL-----ESRAAGPLDALSTREREVLQLVAEGHSSAQVAAMLSL 179 + +S+ ++ +V + AA P D L+ RER + +A G S+ ++A L + Sbjct: 123 EPVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSLEV 182 Query: 180 SPKSIETYRSRLMQKIGVSDLPSLVKFSIHHGL 212 + +++ + L++K+ +S + +++ HGL Sbjct: 183 AESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGL 215 >gi|300312077|ref|YP_003776169.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 132 bits (333), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 74/214 (34%), Positives = 131/214 (61%), Gaps = 3/214 (1%) Query: 1 VTAPIRIYIADDHTIVRDGLAVMLQVHSDITVVGSGSDGRQAVKEIEQLHPDVVIMDIAM 60 VTA I++ IADDH IVR+GL + DI V G+ ++G +A+K + + DV+++DI + Sbjct: 5 VTAAIKVLIADDHAIVREGLRQICAGSKDIMVAGNAANGLEAIKLAREGNGDVLLLDIVL 64 Query: 61 PNLNGIEAALLLRDVAPAVKTIMLSMYATKEHIFRALQAGARGYLLKNSAGSELVNAIRI 120 P+ NGI+ +R P + ++LS++ ++ RAL+AGA G+L K +A +EL+ AIR Sbjct: 65 PDRNGIDILKQIRKEQPELPVLILSIHREDQYAIRALKAGAAGFLNKQAAPAELLAAIRQ 124 Query: 121 VQSGQRYLSQKISDAVVDDYLLESRAAGPL-DALSTREREVLQLVAEGHSSAQVAAMLSL 179 SG++Y+S ++ + + + PL + LS RE + + ++A G + + +AA L+L Sbjct: 125 AASGRKYVSPSLAQELANQIGFDHET--PLHETLSDREYQTMVMIASGKTVSDIAAELTL 182 Query: 180 SPKSIETYRSRLMQKIGVSDLPSLVKFSIHHGLI 213 S K+I YRSR++ K+ + L +++ + L+ Sbjct: 183 SVKTISMYRSRVLSKMKMRHNAELTHYALKNALV 216 >gi|300310532|ref|YP_003774624.1| virulence regulator protein [Herbaspirillum seropedicae SmR1] Length = 209 Score = 119 bits (298), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 120/209 (57%), Gaps = 4/209 (1%) Query: 6 RIYIADDHTIVRDGLAVMLQVHSDITVVGSGSDGRQAVKEIEQLHPDVVIMDIAMPNLNG 65 +I + DDH +VR G+ + + + G S +A++ + D+V++DIAMP+ +G Sbjct: 3 KILVVDDHAVVRAGVHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSG 62 Query: 66 IEAALLLRDVAPAVKTIMLSMYATKEHIFRALQAGARGYLLKNSAGSELVNAIRIVQSGQ 125 +E ++ P + +MLSM+ + + L++GA GY+ K + +ELVNAI + G Sbjct: 63 VEVLKQIKREKPELPVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGH 122 Query: 126 RYLSQKISDAVVDDYLLESRAAGPL-DALSTREREVLQLVAEGHSSAQVAAMLSLSPKSI 184 +Y+S +++ + + + + PL + LS RE E+ + +G Q+A L LS K++ Sbjct: 123 KYISYGVAELLTSEPVDSEK---PLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTV 179 Query: 185 ETYRSRLMQKIGVSDLPSLVKFSIHHGLI 213 TYRSR++QK+ +++ ++ ++I + LI Sbjct: 180 STYRSRVLQKMSMTNNADIIYYAIKNNLI 208 >gi|300311281|ref|YP_003775373.1| LuxR family response regulator protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 118 bits (296), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 114/202 (56%), Gaps = 7/202 (3%) Query: 7 IYIADDHTIVRDGLAVMLQVHSDITVVGSGSDGRQAVKEIEQLHPDVVIMDIAMPNLNGI 66 I + DDH +VRDGL L+ + VV +A+ D+ +MDI M +NGI Sbjct: 14 IMLIDDHPLVRDGLRARLETVPGLEVVAEAGHADEALAAAAAQEIDLTLMDINMRGINGI 73 Query: 67 EAALLLRDVAPAVKTIMLSMYATKEHIFRALQAGARGYLLKNSAGSELVNAIRIVQSGQR 126 E L P + ++LSM+ E++ +++QAGARGY+LK++ ++V+AI V+SG Sbjct: 74 ELTALFHARHPEIAVLILSMHDKAEYVMQSIQAGARGYVLKDAPSQDIVHAIETVRSGGI 133 Query: 127 YLSQKISDAVVDDYLLESRAAGPLDALSTREREVLQLVAEGHSSAQVAAMLSLSPKSIET 186 Y S ++ + ++ P + L+ REREVL +A G S+ Q+A L LS +++ET Sbjct: 134 YYSAALARQL-------TQPLPPRELLTQREREVLMHIANGESNKQIARELDLSVRTVET 186 Query: 187 YRSRLMQKIGVSDLPSLVKFSI 208 +R + +K+ + L+KF++ Sbjct: 187 HRLNIKRKLNIDGQAELIKFAV 208 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 594,712 Number of extensions: 21702 Number of successful extensions: 204 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 208 Number of HSP's successfully gapped: 12 Length of query: 216 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 135 Effective length of database: 1,236,335 Effective search space: 166905225 Effective search space used: 166905225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)