BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0030.p
         (463 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312635|ref|YP_003776727.1| sugar ABC transporter periplasm...   679   0.0  

>gi|300312635|ref|YP_003776727.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 443

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/419 (78%), Positives = 368/419 (87%), Gaps = 2/419 (0%)

Query: 2   KLSRREFLIAGAASAAAASTVGGSAFAAPTAP--GGIDYPIEKGATLRVLRWKRFVQGDE 59
           KL+RREFL+  AA+AAA      +  A P A     I YPIE+GATLRVLRWKRFVQGDE
Sbjct: 3   KLTRREFLVTSAAAAAATGMGANAFAAGPGAAGADSIKYPIEQGATLRVLRWKRFVQGDE 62

Query: 60  DLWNENVKKFTELTGVPVRTDSEGFEDVRPKAAVAANVGSGPDIVLGWFDDPHQYPTKLL 119
           DLWN N+KKFTELTGV VRTDSEG+EDVRPK+AVAANVGSGPDIVLGWFDDP QYPTKL+
Sbjct: 63  DLWNANIKKFTELTGVAVRTDSEGWEDVRPKSAVAANVGSGPDIVLGWFDDPQQYPTKLV 122

Query: 120 DVTDLANSLGSRYGGWYDVFQKYGKSNGKWIAIPLGVIGICLAYRDSQLKAAGFEAVPKD 179
           D+TDLA+SLG RYGGWYDV +KYG  +GKWIA+PLGVIG  L YR+SQ+KAAGF+A+PKD
Sbjct: 123 DMTDLADSLGKRYGGWYDVCRKYGTKDGKWIALPLGVIGNALVYRESQIKAAGFDAIPKD 182

Query: 180 LPGFLKMAQALKAKNTPIGFAHGKAVGDANNYAHWLLWAHGGKLVDERGNVVINSPETRA 239
             GFLK+ QALKAK+TP+GFA GKAVGDANN+AHWLLW+HGGKLVD+ G V INSPETRA
Sbjct: 183 TAGFLKLCQALKAKDTPVGFALGKAVGDANNWAHWLLWSHGGKLVDKSGKVAINSPETRA 242

Query: 240 ALEYGKQLYATMVQGTLSWQDPSNNKAYLDGQVSLTNNGISIYYAAKNSTDPKLLELAKD 299
           ALEY KQLYAT V GTLSWQDPSNNKAYLDGQ+S+T NGIS+YYAAKNS DPKL E+ KD
Sbjct: 243 ALEYAKQLYATFVPGTLSWQDPSNNKAYLDGQISMTANGISVYYAAKNSPDPKLQEIGKD 302

Query: 300 TQHAHYPIGVSGKPTELMQLTQMMAFKHTKYPNAAKAFLQFMMEPDQFNPWMKAAIGYVS 359
           T HAH+PIG  GKP+ELMQ+TQMM FKHTKYPNAAKAF+QFM EPDQ+NPWMKA+IGYVS
Sbjct: 303 TLHAHFPIGPVGKPSELMQITQMMVFKHTKYPNAAKAFVQFMFEPDQYNPWMKASIGYVS 362

Query: 360 QPLKAYEKNPVWTADPKATPYRDAASLMLDHGHAGPLGQASAACLADYVLVDMVAEAAS 418
           Q LKAYEKNP+WT DPKAT YRD+ASLMLDHGH GPLGQASAAC+ADYV+VDMVAEAAS
Sbjct: 363 QSLKAYEKNPIWTEDPKATVYRDSASLMLDHGHEGPLGQASAACMADYVVVDMVAEAAS 421


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,367,102
Number of extensions: 58587
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 374
Effective length of database: 1,198,455
Effective search space: 448222170
Effective search space used: 448222170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)