BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0022.p
         (270 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspiril...   395   e-111
gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspiril...    91   1e-19

>gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score =  395 bits (1014), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/290 (67%), Positives = 221/290 (76%), Gaps = 22/290 (7%)

Query: 1   MSSIRHLIHGLVRDIGFPVRRLLPAAAARTVGPFVFFDHMGPVEF--------------- 45
           MS+IRH IHGL RDIGFPVRRLLPAAAARTVGPFVFFDHMGPVEF               
Sbjct: 1   MSNIRHKIHGLTRDIGFPVRRLLPAAAARTVGPFVFFDHMGPVEFDAGTTEGDVRPHPHI 60

Query: 46  -------XFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERVPDDIRNDKVPVHGLQ 98
                   FSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSER+PDDIR  KVPVHGLQ
Sbjct: 61  GLATVTYLFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPVHGLQ 120

Query: 99  MWVALPKDQEQGDASFHHYAEDDMPRIEVGAASLHLLAGKAYGHESPVKTSSPTLYVCGR 158
           MWVALP DQE G   FHHYA D+MP   VG A LH+LAG A+G  SPV+T+SPTLYV G 
Sbjct: 121 MWVALPADQEDGAPLFHHYAADEMPDTVVGGARLHVLAGSAFGVSSPVQTASPTLYVAGS 180

Query: 159 IKAGGTLSLPADYSERSVYVVTGAATLDGEALEAGVLAILEPGIDVLLTAQDDTLFMVLG 218
              G TL + A+  ER+VYVV G  +LDGE LEAG LAILEPG  V L A+ +T+FM+LG
Sbjct: 181 TTDGATLEIAAEVQERAVYVVRGEVSLDGERLEAGTLAILEPGAAVTLQAEGETVFMILG 240

Query: 219 GEPIDGPRFVWWNFVASSKELIDSAKLAWRAQDRDVFGAIPGEVEWIPLP 268
           G P+DGPRFVWWNFV++S++ I++AK AW A+D+ VF  IPGE EWIPLP
Sbjct: 241 GAPLDGPRFVWWNFVSTSRDKIEAAKQAWNARDKSVFPDIPGESEWIPLP 290


>gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 289

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 136/281 (48%), Gaps = 39/281 (13%)

Query: 3   SIRHLIHGL-VRD-IGFPVRRLLPAAAARTVGPFVFFD------------------HMG- 41
            I  L++G+  +D  G  + R+L     R + PF+  D                  H G 
Sbjct: 11  QIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGFPDHPHRGF 70

Query: 42  -PVEFXFSGAMMHRDSLGVVQRITPGAVNWMAAGRGIVHSERVPDDIRNDKVPVHGLQMW 100
             V +  +G M HRD+ G    + PG + WM AGRG+VHSE +P+    +   + G Q+W
Sbjct: 71  ETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSE-LPE---QENGLMSGFQLW 126

Query: 101 VALPKDQEQGDASFHHYAEDDMPRIEVG-AASLHLLAGKAYGHESPVK--TSSPTLYVCG 157
           V L    +  +  +       +P         + +LAG A+G +  ++  T+ P LY+  
Sbjct: 127 VNLAGKDKMTEPGYQDIPAAGIPETSPQPGVRVRVLAGSAFGTDGAIRRATTEP-LYLDL 185

Query: 158 RIKAGGTLSLPADYSERS-VYVVTGAATL---DGEA--LEAGVLAILE--PG-IDVLLTA 208
            ++AG TL+LP   +  + +YV  GA  +   DGE    EAG +A+L   PG   V + A
Sbjct: 186 ALEAGTTLALPIPATHNAFLYVYEGALAVGAADGETRPAEAGRMAVLSNVPGSAGVTVRA 245

Query: 209 QDDTLFMVLGGEPIDGPRFVWWNFVASSKELIDSAKLAWRA 249
           +  + F+++ G+P++ P   W  FV +++E ++ A   +RA
Sbjct: 246 EQASRFLLIAGKPLNEPITQWGPFVMNTREQVEQAIDDFRA 286


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 959,065
Number of extensions: 41775
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,222,130
Effective search space: 227316180
Effective search space used: 227316180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)