BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0021.p
         (286 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspiril...   470   e-134
gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspiril...   112   2e-26
gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspiril...    72   4e-14

>gi|300311847|ref|YP_003775939.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 289

 Score =  470 bits (1210), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/290 (80%), Positives = 251/290 (86%), Gaps = 7/290 (2%)

Query: 1   MST-TFTRQLERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDKPDDYLAGF 59
           MST  +TRQ+ERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSD+P DYLAGF
Sbjct: 3   MSTPLYTRQIERLVNGIPTQDGAGVSLTRVLTHDLQRRLDPFLMLDAFHSDEPSDYLAGF 62

Query: 60  PDHPHRGFETVTYMLQGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQEDGLMSG 119
           PDHPHRGFETVTYML GRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQE+GLMSG
Sbjct: 63  PDHPHRGFETVTYMLAGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQENGLMSG 122

Query: 120 FQLWVNLAGRDKMTTPGYSDIPSAQIPEVTPQDGVQVRVLAGQAFGVKGAVERPTTAPLY 179
           FQLWVNLAG+DKMT PGY DIP+A IPE +PQ GV+VRVLAG AFG  GA+ R TT PLY
Sbjct: 123 FQLWVNLAGKDKMTEPGYQDIPAAGIPETSPQPGVRVRVLAGSAFGTDGAIRRATTEPLY 182

Query: 180 LDLHVQADKRLALPIPATHNAFLYVYEGELLVGQ---DQRVAAAGRMAILSNTAGAEGVD 236
           LDL ++A   LALPIPATHNAFLYVYEG L VG    + R A AGRMA+LSN  G+    
Sbjct: 183 LDLALEAGTTLALPIPATHNAFLYVYEGALAVGAADGETRPAEAGRMAVLSNVPGSA--- 239

Query: 237 GVEIEASKESRFLLIAGQPLNEPIAQWGPFVMNTREEVEQAIDDFRAGKF 286
           GV + A + SRFLLIAG+PLNEPI QWGPFVMNTRE+VEQAIDDFRAG+F
Sbjct: 240 GVTVRAEQASRFLLIAGKPLNEPITQWGPFVMNTREQVEQAIDDFRAGRF 289


>gi|300311846|ref|YP_003775938.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 292

 Score =  112 bits (281), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 132/271 (48%), Gaps = 25/271 (9%)

Query: 23  GVSLTRVLTHDLQRRLDPFLMLDAFHSDKPDDYLAGFPD-----HPHRGFETVTYMLQGR 77
           G  + R+L     R + PF+  D      P ++ AG  +     HPH G  TVTY+  G 
Sbjct: 16  GFPVRRLLPAAAARTVGPFVFFDHM---GPVEFDAGTTEGDVRPHPHIGLATVTYLFSGA 72

Query: 78  MRHRDNAGNEGLLEPGGMQWMTAGRGLVHSE-LPE---QEDGLMSGFQLWVNLAGRDKMT 133
           M HRD+ G    + PG + WM AGRG+VHSE +P+   ++   + G Q+WV L    +  
Sbjct: 73  MMHRDSLGVVQRITPGAVNWMAAGRGIVHSERIPDDIREQKVPVHGLQMWVALPADQEDG 132

Query: 134 TPGYSDIPSAQIPEVTPQDGVQVRVLAGQAFGVKGAVERPTTAP-LYLDLHVQADKRLAL 192
            P +    + ++P+ T   G ++ VLAG AFGV   V+  T +P LY+         L +
Sbjct: 133 APLFHHYAADEMPD-TVVGGARLHVLAGSAFGVSSPVQ--TASPTLYVAGSTTDGATLEI 189

Query: 193 PIPATHNAFLYVYEGELLVGQDQRVAAAGRMAILSNTAGAEGVDGVEIEASKESRFLLIA 252
                  A +YV  GE  V  D     AG +AIL   A       V ++A  E+ F+++ 
Sbjct: 190 AAEVQERA-VYVVRGE--VSLDGERLEAGTLAILEPGA------AVTLQAEGETVFMILG 240

Query: 253 GQPLNEPIAQWGPFVMNTREEVEQAIDDFRA 283
           G PL+ P   W  FV  +R+++E A   + A
Sbjct: 241 GAPLDGPRFVWWNFVSTSRDKIEAAKQAWNA 271


>gi|300312869|ref|YP_003776961.1| pirin-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 233

 Score = 72.4 bits (176), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 21/196 (10%)

Query: 58  GFPDHPHRGFETVTYMLQGRMRHRDNAGNEGLLEPGGMQWMTAGRGLVHSELPEQEDGLM 117
           GF  H HR  E ++Y+L+G + H+D+ GN  ++ PG +Q M+AG G+ HSE    +DG  
Sbjct: 53  GFGTHGHRDMEIISYVLEGELAHKDSMGNGSVIRPGDVQRMSAGTGVRHSEYNHSQDGTT 112

Query: 118 SGFQLWV--NLAGRDKMTTPGYSDIPSAQIPEVTPQDGVQVRVLAGQAFGVKGAVERPTT 175
              Q+W+  + AG      PGY +   +       +DG ++R++A  A G  G+V     
Sbjct: 113 HFLQIWIMPDRAG----AEPGYQEAHFS----AADKDG-KLRLVA-SADGRDGSVSMNQD 162

Query: 176 APLYLDLHVQADKRLALPIPATHNAFLYVYEGELLVGQDQRVAAAGRMAILSNTAGAEGV 235
           A LY  L   A +     +P     +++V  G++ V  + +   AG    LS       V
Sbjct: 163 AQLYAGLFDGA-QTAEYTLPQGRLGYVHVARGKISV--NGQALEAGDAVKLS------AV 213

Query: 236 DGVEIEASKESRFLLI 251
           D +EI    ++  LL 
Sbjct: 214 DRIEIGGGDKAEVLLF 229


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,045,627
Number of extensions: 50525
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 3
Length of query: 286
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,222,130
Effective search space: 246870260
Effective search space used: 246870260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)