BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0019.p (306 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311849|ref|YP_003775941.1| LysR family transcription regul... 480 e-137 gi|300312870|ref|YP_003776962.1| transcription regulator protein... 108 4e-25 gi|300313810|ref|YP_003777902.1| LysR family transcription regul... 101 6e-23 gi|300312305|ref|YP_003776397.1| LysR family transcription regul... 75 6e-15 gi|300313689|ref|YP_003777781.1| LysR family transcription regul... 66 3e-12 >gi|300311849|ref|YP_003775941.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 480 bits (1236), Expect = e-137, Method: Compositional matrix adjust. Identities = 244/302 (80%), Positives = 269/302 (89%) Query: 1 MNIERFSLDQLRVFVQVADSGSFLAAARVLARAQSAVSYAIGTLESQLNVALFDRSGYRP 60 MNIER SLDQLRVFVQVADSGSFLAAAR LARAQSAVSYAI +LE QL + LFDRSGYRP Sbjct: 1 MNIERLSLDQLRVFVQVADSGSFLAAARKLARAQSAVSYAIASLEEQLGLLLFDRSGYRP 60 Query: 61 QLTDAGEALLRDARQVLDQVDSLQVRASAFSQGQELEVALAVDVFFPTDCLVDLLRRFRD 120 QLT GEALL DARQVLD VDSLQVRAS++++GQELE+ALAVDVFFP DCLVDLL+RFR Sbjct: 61 QLTAPGEALLADARQVLDHVDSLQVRASSYARGQELEMALAVDVFFPLDCLVDLLQRFRA 120 Query: 121 VFPAVTVRLEVEALGAVAERVLDGRAMLGILGTLPTTPPNLLRVTLPSVMVVGVVSPQHP 180 FPAVTVRLEVEALGAVAERV+DGRAMLGILGTLPTTPPNL+R+TLPSV +V VV+P HP Sbjct: 121 AFPAVTVRLEVEALGAVAERVIDGRAMLGILGTLPTTPPNLMRITLPSVRLVAVVAPHHP 180 Query: 181 LAAVKGRIPDKLLAQQTQLVLSDRSELTARQDFSVHSRLSWRMSDLGTKHALLRAAMGWG 240 LA VKGRI +K+L QQTQLVLSDRSELTARQDFSVHSRL+WRMSDLGTKHALLRA MGWG Sbjct: 181 LAKVKGRIAEKMLLQQTQLVLSDRSELTARQDFSVHSRLTWRMSDLGTKHALLRAGMGWG 240 Query: 241 YMPEHVVKDDLKSGKLVRIQTSQHSPEGMALPIQCVYRPDYRAGPALSWWLDSLAGLKTL 300 MP HVVK+DL +G+LV I T H P+G LPIQCVY+PD+RAGPALSWWLD+LA L +L Sbjct: 241 NMPLHVVKEDLAAGRLVSISTIHHPPQGAELPIQCVYKPDHRAGPALSWWLDALANLGSL 300 Query: 301 DG 302 + Sbjct: 301 EA 302 >gi|300312870|ref|YP_003776962.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 108 bits (271), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 88/299 (29%), Positives = 144/299 (48%), Gaps = 14/299 (4%) Query: 5 RFSLDQLRVFVQVADSGSFLAAARVLARAQSAVSYAIGTLESQLNVALFDRSGYRPQLTD 64 +L+ L + + GSF AAA L R SA++Y++ LE L+V LFDR G+R QLT Sbjct: 2 NLTLESLLILDMIDRKGSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLTP 61 Query: 65 AGEALLRDARQVLDQVDSLQVRASAFSQGQELEVALAVDVFFPTDCLVDLLRRFRDVFPA 124 AG LL++ R +L + L+ R + G+E E+ + ++ P D ++ ++ F Sbjct: 62 AGLQLLQEGRHLLLAANDLEQRVKRTATGRETELHIVLNSLIPFDKMLPIIAAFDREQSG 121 Query: 125 VTVRLEVEALGAVAERVLDGRAMLGILGTLPTTPPNLLRVT-------LPSVMVVGVVSP 177 +R L E++++GRA L I TL P ++R + L +V V VV+P Sbjct: 122 TRLRFTPGVLTGAWEKLIEGRANLVIGVTLDG--PEVVRTSGRFQMQELGAVDWVFVVAP 179 Query: 178 QHPLAAVKGRIPDKLLAQQTQLVLSDRSELTARQDFSVHS-RLSWRMSDLGTKHALLRAA 236 QHPLA V+ + +L+ + + D S+ + S + + ++ + K A Sbjct: 180 QHPLAGVEEPLSAELVRSHRAIAVGDNSQSLPTLTMGLLSGQETLTVATVADKLQAQLAG 239 Query: 237 MGWGYMPEHVVKDDLKSGKLVRIQTSQHSPEGMALPIQCVYRPDYRAGPALSWWLDSLA 295 +G G++P + L SG LV QT P + V P G +L W++ LA Sbjct: 240 LGCGHLPRIWAEPYLASGALVEKQTLAAKPNDNFM----VAWPKAEQGKSLKWFIQHLA 294 >gi|300313810|ref|YP_003777902.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 101 bits (252), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 87/259 (33%), Positives = 128/259 (49%), Gaps = 10/259 (3%) Query: 6 FSLDQLRVFVQVADSGSFLAAARVLARAQSAVSYAIGTLESQLNVALFDRSGYRPQLTDA 65 FS D +RVF+ V DSGSF AAAR L R S+VS I LE++L++ LFDR+ + TD Sbjct: 3 FSSDNVRVFLAVLDSGSFSAAARELGRVPSSVSMTISQLEAELDLQLFDRTARDARPTDM 62 Query: 66 GEALLRDARQVLDQVDSLQVRASAFSQGQELEVALAVDVFFPTDCLVDLLRRFRDVFPAV 125 AL DAR + + L A A QG E ++ LAV + L FP+ Sbjct: 63 ARALEPDARLLASTLRQLDAHALAMHQGLERKLTLAVAPELLSAPWAKPLAVLAQEFPS- 121 Query: 126 TVRLEVEALG---AVAERVL-DGRAMLGILGTLPTTPPNLLRVTLPSVMVVGVVSPQHP- 180 LEVE L A A R+L D A L ++ P S M+V V++P HP Sbjct: 122 ---LEVEVLSSPQADAMRMLYDDTAQLALVFERPAGNDREAFQEFSSEMLVAVIAPDHPA 178 Query: 181 LAAVKGRIPDKLLAQQTQLVLSDRSELTARQDFSVHSRLSWRMSDLGTKHALLRAAMGWG 240 L K ++ + L Q+ ++ R + F + +R WR + +L+R +GW Sbjct: 179 LRRKKRKLRYEDLYDIRQIAVASRDARVSDPRFFL-ARQIWRTDNHLATLSLVREGLGWA 237 Query: 241 YMPEHVVKDDLKSGKLVRI 259 Y+P+ +V+ +++G L I Sbjct: 238 YLPQSLVQAQIEAGALTVI 256 >gi|300312305|ref|YP_003776397.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 74/249 (29%), Positives = 114/249 (45%), Gaps = 17/249 (6%) Query: 4 ERFSLDQLRVFVQVADSGSFLAAARVLARAQSAVSYAIGTLESQLNVALFDRSGYRPQLT 63 RF L LR+F+ + +SGS A+ A ++ S I +E L L +R Q T Sbjct: 3 NRFELSDLRLFLHIVESGSITGGAQRAHMALASASARIRNMEDALGTPLLERGRRGVQTT 62 Query: 64 DAGEALLRDARQVLDQVDSLQVRASAFSQGQELEVALAVDVFFPTDCLVDLLRRFRDVFP 123 DAG AL AR + Q++ L+ +++G + + L + T+ L ++L RF P Sbjct: 63 DAGRALAHHARMMAQQMEQLRDELGQYARGLKGHIRLLCNTSAMTEFLPEVLARFLARHP 122 Query: 124 AVTVRLEVEALGAVAERVLDGRAMLGILGTLPTTPPNLLRVTLPSVMVVGVVSPQHPLAA 183 + LE + V + V+DG A +GI+ + P L +V V+S +HPLA Sbjct: 123 HTDIELEEKLSYEVVQAVIDGVADVGIIADSTDSGP-LQTYPFRQDHLVAVLSKRHPLAR 181 Query: 184 VKGRIPDKLLAQQTQLVLSDRSELTARQDFSVHS-----RLSWRMSDLGTKHALLRAAMG 238 K +LL + + LS S L +Q S H+ RL +R+ LR+ G Sbjct: 182 RKSLAFAELLGEDF-VGLSGDSAL--QQHLSGHATRAGKRLQYRVR--------LRSFDG 230 Query: 239 WGYMPEHVV 247 M EH V Sbjct: 231 ICRMVEHQV 239 >gi|300313689|ref|YP_003777781.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 66.2 bits (160), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 9/177 (5%) Query: 11 LRVFVQVADSGSFLAAARVLARAQSAVSYAIGTLESQLNVALFDRSGYRPQLTDAGEALL 70 LR F QV +GS AAA L A SAVS I +E + V LF+R LT AGE L+ Sbjct: 6 LRYFYQVGRTGSLTAAAERLDVAVSAVSRQIAKMEEETGVPLFERRARGMVLTPAGEVLM 65 Query: 71 RDARQVLDQVDSL--QVRA-SAFSQGQELEVALAVDVFFPTDCLVDLLRRFRDVFPAVTV 127 AR+ L +++ + +VR A QG + LA F D L ++ +FR+ +P + Sbjct: 66 AYARRNLLEMEQVLAEVRGLHAVGQGV---ITLACSEGFAWDLLPNVTAQFREQYPGLQF 122 Query: 128 RLEVEALGAVAERVLDGRAMLGILGTLPTTPPNLLRVTL-PSVMVVGVVSPQHPLAA 183 +L V ++ V+DG A + + T P L V S V ++ HPLA+ Sbjct: 123 KLHVVGAARASQMVIDGEADISV--TYSLAPAEGLAVAYRESGPVFALMKRDHPLAS 177 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 838,441 Number of extensions: 31284 Number of successful extensions: 198 Number of sequences better than 1.0e-08: 37 Number of HSP's gapped: 190 Number of HSP's successfully gapped: 37 Length of query: 306 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 221 Effective length of database: 1,217,395 Effective search space: 269044295 Effective search space used: 269044295 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)