BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0018.p (195 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311850|ref|YP_003775942.1| AraC family transcription regul... 308 2e-85 gi|300312798|ref|YP_003776890.1| AraC family transcription regul... 176 9e-46 gi|300313912|ref|YP_003778004.1| AraC family transcription regul... 157 4e-40 gi|300313081|ref|YP_003777173.1| transcription regulator protein... 152 2e-38 gi|300311694|ref|YP_003775786.1| AraC family transcription regul... 109 1e-25 >gi|300311850|ref|YP_003775942.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 343 Score = 308 bits (790), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 150/194 (77%), Positives = 166/194 (85%) Query: 1 VTTHWDWALRLQQQFPAIEVDPEPIFIRQGDIWTSAGVTAGIDLALALVEQDYGHKVAIA 60 VTTHWDWA LQ+++PA++VD +PI+IRQG IWTSAGVTAGIDLALALVEQD GH AIA Sbjct: 135 VTTHWDWAQELQRRYPALQVDADPIYIRQGRIWTSAGVTAGIDLALALVEQDLGHASAIA 194 Query: 61 TARQLVMFIKRPGGQSQFSVPLVSQSSENARFAELHAWIASNLKHDLRVENLASRVNMSP 120 TARQLVMFIKRPGGQSQFS PL +QS+ RFAELHAWIA++L DL VENLA R MSP Sbjct: 195 TARQLVMFIKRPGGQSQFSTPLATQSTGAGRFAELHAWIAAHLADDLHVENLAHRAGMSP 254 Query: 121 RTFARTYVAEQGRTPAKTVEAMRLEAACRALEETDLPLKSIATETGHGEEQNLRRVFQRQ 180 RTFAR YVAE GRTPA+TVE MRLEAA RALEET LPLK IA++ G+GEEQNLRRVF RQ Sbjct: 255 RTFARLYVAETGRTPARTVELMRLEAARRALEETRLPLKRIASQAGYGEEQNLRRVFLRQ 314 Query: 181 LGVSPAQYRSRFSA 194 LGVSP QYR RF+A Sbjct: 315 LGVSPGQYRERFAA 328 >gi|300312798|ref|YP_003776890.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 176 bits (447), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 91/193 (47%), Positives = 121/193 (62%) Query: 1 VTTHWDWALRLQQQFPAIEVDPEPIFIRQGDIWTSAGVTAGIDLALALVEQDYGHKVAIA 60 VTTHW LQQ FP +VDP+ I+ G I TSAGVT GIDLALALV D G ++A A Sbjct: 141 VTTHWAAVDLLQQYFPKAKVDPDAIYRIDGPICTSAGVTTGIDLALALVRDDLGQEIASA 200 Query: 61 TARQLVMFIKRPGGQSQFSVPLVSQSSENARFAELHAWIASNLKHDLRVENLASRVNMSP 120 AR LV+F+ RPG Q Q S LV+Q S F+ L W+ + + D+ V LA R MSP Sbjct: 201 IARDLVLFLHRPGRQQQISATLVAQQSAGDLFSALLVWMLDHPQEDMSVNALAERAAMSP 260 Query: 121 RTFARTYVAEQGRTPAKTVEAMRLEAACRALEETDLPLKSIATETGHGEEQNLRRVFQRQ 180 R FAR ++ E G+ P + V +R++ ACR LE+T ++ IA +G L RVF++ Sbjct: 261 RNFARRFLREVGKPPGQYVLELRIDHACRHLEKTGWSIERIAERSGLKNADTLHRVFRQH 320 Query: 181 LGVSPAQYRSRFS 193 LG++PAQYR+R + Sbjct: 321 LGMTPAQYRARLA 333 >gi|300313912|ref|YP_003778004.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 157 bits (398), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 82/188 (43%), Positives = 122/188 (64%), Gaps = 1/188 (0%) Query: 2 TTHWDWALRLQQQFPAIEVDPEPIFIRQGDIWTSAGVTAGIDLALALVEQDYGHKVAIAT 61 TTHW +A +Q++FP I+V+ + I+I G +WTSAG+TAG+DLALA+V +D G + A + Sbjct: 122 TTHWAFARAMQERFPDIQVEDDRIYIVDGPLWTSAGMTAGLDLALAMVGKDLGEEAARSV 181 Query: 62 ARQLVMFIKRPGGQSQFSVPLVSQSSENARFAELHAWIASNLKHDLRVENLASRVNMSPR 121 AR+LVM R GGQSQ S ++ + + R + + NLK L VE LA + N+S R Sbjct: 182 ARKLVMHQHRAGGQSQHS-EMLELAPKTDRIQDALNYARRNLKRALTVEELAEQANLSAR 240 Query: 122 TFARTYVAEQGRTPAKTVEAMRLEAACRALEETDLPLKSIATETGHGEEQNLRRVFQRQL 181 F R + +E G++PAK +E +RLEAA +E++ PL+ +A ETG + +++R VF R Sbjct: 241 QFTRVFTSETGQSPAKAIEGLRLEAARLMIEQSRHPLEVVARETGFRDRRHMREVFLRGF 300 Query: 182 GVSPAQYR 189 GV+P R Sbjct: 301 GVAPQSMR 308 >gi|300313081|ref|YP_003777173.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 330 Score = 152 bits (383), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 83/188 (44%), Positives = 115/188 (61%), Gaps = 1/188 (0%) Query: 2 TTHWDWALRLQQQFPAIEVDPEPIFIRQGDIWTSAGVTAGIDLALALVEQDYGHKVAIAT 61 TTHW A +LQQ PA++VD + I+ R G +WTSAG++AGIDLALAL+E D+G ++A + Sbjct: 124 TTHWRMAAKLQQMHPAVKVDSDRIYSRDGAVWTSAGISAGIDLALALIEDDHGVELARSV 183 Query: 62 ARQLVMFIKRPGGQSQFSVPLVSQSSENARFAELHAWIASNLKHDLRVENLASRVNMSPR 121 AR+LV++ +RPGGQSQFS L + R + +L L V+ LA +S R Sbjct: 184 ARELVVYHRRPGGQSQFSA-LQEMDGGSERIRRALGFAREHLHQALTVDLLAEVACLSRR 242 Query: 122 TFARTYVAEQGRTPAKTVEAMRLEAACRALEETDLPLKSIATETGHGEEQNLRRVFQRQL 181 F R + AE G+TPA+ +E MR EAA +E++ L+SIA TG G+ +RR R Sbjct: 243 QFDRAFAAETGQTPARAIEQMRAEAARLRIEQSQDTLESIARATGFGDADRMRRACLRLF 302 Query: 182 GVSPAQYR 189 G P R Sbjct: 303 GQPPQAMR 310 >gi|300311694|ref|YP_003775786.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 375 Score = 109 bits (273), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 105/199 (52%), Gaps = 7/199 (3%) Query: 1 VTTHWDWALRLQQQFPAIEVDPEPIFIRQGDIWTSAGVTAGIDLALALVEQDYG----HK 56 V HW RLQ++FP I V+P ++ +++TSA G ++ALAL+E D G H+ Sbjct: 161 VAAHWALRDRLQREFPDIHVEPGDTLVQDQNVFTSADSGTGAEVALALIEDDLGSSFAHR 220 Query: 57 VAIA-TARQLVMFIKRPGGQSQFSVPLVSQSSENARFAELHAWIASNLKHDLRVENLASR 115 + + T RQ F S+ SE + A + W+ ++ + + A Sbjct: 221 IEQSLTVRQHHQFKHSLSRGSEIRPGEKRHRSERIQKALI--WLDEHMSSSINMSEAADH 278 Query: 116 VNMSPRTFARTYVAEQGRTPAKTVEAMRLEAACRALEETDLPLKSIATETGHGEEQNLRR 175 V+MS R F R + E G TP + +R+EAAC L+ETDLP++ IA G ++L R Sbjct: 279 VSMSERNFQREFKRETGETPHCFLTKIRIEAACLYLKETDLPIEKIARRCGLVSGEHLAR 338 Query: 176 VFQRQLGVSPAQYRSRFSA 194 +F++ GVSP +YR + +A Sbjct: 339 LFRKHHGVSPGEYRKKENA 357 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.130 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 610,357 Number of extensions: 22668 Number of successful extensions: 103 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 101 Number of HSP's successfully gapped: 5 Length of query: 195 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 115 Effective length of database: 1,241,070 Effective search space: 142723050 Effective search space used: 142723050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)