BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0016.p
         (184 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311851|ref|YP_003775943.1| major facilitator superfamily p...   229   8e-62

>gi|300311851|ref|YP_003775943.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score =  229 bits (585), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 122/161 (75%), Positives = 138/161 (85%)

Query: 13  AAPLAAVACHHGIDDGANIIQWHLVGMYAPSFFAGALIKRCGLGPVVLAGVALNLACALI 72
           AAPLAAVACHHGIDDGA IIQWHL+GMYAPSFFAG L++R GLGPV+LAG+A+NL CA++
Sbjct: 249 AAPLAAVACHHGIDDGAAIIQWHLMGMYAPSFFAGRLVQRVGLGPVLLAGLAMNLGCAVV 308

Query: 73  AMASTSLPAFYVALLCLGVGWNFMFVGGTTLLAQSYRPSERARAQGLSEFLRYAATALAT 132
           AM ST+LPAFY+ALL LGVGWNFMFVGGTTLLAQSY PSERA+ QG SE LRYAATALAT
Sbjct: 309 AMLSTTLPAFYLALLLLGVGWNFMFVGGTTLLAQSYAPSERAKTQGFSELLRYAATALAT 368

Query: 133 LAAGPLLEHYGWSALNLAILPLLLICALVSVWWMLANAAAA 173
           L AGPLL  +GW  LNLAILP+LL+ AL ++ WM     AA
Sbjct: 369 LGAGPLLARFGWQTLNLAILPVLLLSALATLHWMRGQRRAA 409


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 414,382
Number of extensions: 14846
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,241,070
Effective search space: 129071280
Effective search space used: 129071280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)