BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0015.p
         (213 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311851|ref|YP_003775943.1| major facilitator superfamily p...   275   2e-75

>gi|300311851|ref|YP_003775943.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score =  275 bits (703), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 153/196 (78%), Positives = 171/196 (87%), Gaps = 2/196 (1%)

Query: 13  ASLPDSYGSGYRNARILAICQGLFTCAISIDLTLTALTGYQLAPDKSLATLPFALITVAG 72
           AS PD+  SG RNAR+LA+CQGLFTCAISIDLTLTALTG+QLAPDKSLATLPFALITVAG
Sbjct: 11  ASAPDA--SGARNARVLALCQGLFTCAISIDLTLTALTGWQLAPDKSLATLPFALITVAG 68

Query: 73  AVVTWFAAFLIQRLGRRLSFALGALAGAIGGAISVWSVFHGHFWSFCIGTAGVGVFQAFA 132
           AVVTWFAAFLIQRLGRR SF LGA +  +GG +SVWSV+ GHFWSFC GTA VGVFQAFA
Sbjct: 69  AVVTWFAAFLIQRLGRRWSFVLGAASCCVGGLVSVWSVWQGHFWSFCAGTALVGVFQAFA 128

Query: 133 QYYRLAAADAVSAEFKSRAISTVLTGGVIAAVLGPALASWSKDLFPTALFSGAYLMVALL 192
           QYYRLAAADAV    KSRAI+TVL GGVIAA++GPALA+WSKD  PTALF+GAYL+VA +
Sbjct: 129 QYYRLAAADAVPEAAKSRAIATVLAGGVIAALVGPALAAWSKDWIPTALFAGAYLVVAAM 188

Query: 193 SLLSMIVLLVFYRDTE 208
            LLS++ LL+FYRD  
Sbjct: 189 GLLSVLALLLFYRDQP 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 559,022
Number of extensions: 17633
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 132
Effective length of database: 1,236,335
Effective search space: 163196220
Effective search space used: 163196220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)