BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0014.p
         (176 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311852|ref|YP_003775944.1| nicotinamidase [Herbaspirillum ...   245   2e-66
gi|300313802|ref|YP_003777894.1| hydrolase [Herbaspirillum serop...    59   2e-10

>gi|300311852|ref|YP_003775944.1| nicotinamidase [Herbaspirillum
           seropedicae SmR1]
          Length = 176

 Score =  245 bits (625), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 113/176 (64%), Positives = 142/176 (80%)

Query: 1   MLMNANESALLIIDVQEKLMPAIHDGANVLTQNIRLATIASLLGLPVIATEQTPEKLGPN 60
           ML++A +S LLI+D+Q+KL+PAIH+G  VL + +R+A IA LLGLPV+ATEQ P+KLGPN
Sbjct: 1   MLIDARQSVLLIVDLQQKLLPAIHEGPQVLAEAVRMARIARLLGLPVLATEQMPDKLGPN 60

Query: 61  HPDIKRLCDRTLAKTHFDACVDGLPATFLPACKEVVVSGCEAHVCMLQTAMTLLQNGYRV 120
           HPDI  LC+ TLAK HFDAC DGL AT  P  ++++VSGCEAH+C+LQTA++LLQ GY+V
Sbjct: 61  HPDIAGLCESTLAKQHFDACADGLAATLPPQTRQIIVSGCEAHICVLQTALSLLQAGYQV 120

Query: 121 WVVTDATGSRKTADRDAAFTRLAQAGAHLVTLEMVAFEWMRDSRHPLFREVLKLIK 176
           + +  A GSR+ ADRDAAF RL  AGA  VTLEMVA+EW+  S HP FREVLKL+K
Sbjct: 121 YPLLQACGSRRPADRDAAFARLRGAGAVPVTLEMVAYEWLGQSSHPQFREVLKLVK 176


>gi|300313802|ref|YP_003777894.1| hydrolase [Herbaspirillum
           seropedicae SmR1]
          Length = 229

 Score = 59.3 bits (142), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 15/179 (8%)

Query: 10  LLIIDVQEKLMPAIHDGANVLTQN--IRLATIASLLGLP-VIATEQTPEKLGPNHPDI-- 64
           L+IID Q ++   +        +N  + LA  A +  +P VI T +T    G  +P++  
Sbjct: 17  LIIIDHQPQMAFGVQSMDRQALKNNVVALAKSAKVFNIPTVITTVETQGFSGYTYPELLS 76

Query: 65  ----KRLCDRTLAKTHFDACV-DGLPATFLPACKEVVVSGCEAHVCMLQTAMTLLQNG-Y 118
                 + +RT   +  D  V D L A      K++VV+G    VC    A+  +  G Y
Sbjct: 77  VFPEHDILERTSMNSWDDQKVRDALKAN---GKKKIVVAGLWTEVCNNSFALCAMAEGDY 133

Query: 119 RVWVVTDATGSRKTADRDAAFTRLAQAGAHLVTLEMVAFEWMRD-SRHPLFREVLKLIK 176
            +++V DA+G       D A  R+ QAG   VT + V  EW RD +R   +  V+ +++
Sbjct: 134 EIYMVADASGGTSKEAHDYAMQRMIQAGVIPVTWQQVMLEWQRDWARKETYSAVMDIVR 192


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 526,505
Number of extensions: 19665
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 176
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,245,805
Effective search space: 120843085
Effective search space used: 120843085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 127 (53.5 bits)