BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0013.p
         (297 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311853|ref|YP_003775945.1| Crp/Fnr family transcription re...   366   e-102
gi|300312495|ref|YP_003776587.1| Crp/Fnr family transcription re...   309   2e-85
gi|300311696|ref|YP_003775788.1| Crp/Fnr family transcription re...   130   2e-31

>gi|300311853|ref|YP_003775945.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 255

 Score =  366 bits (940), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/230 (75%), Positives = 203/230 (88%), Gaps = 3/230 (1%)

Query: 28  SLPINAADSPSSPVPV-LQALKAGCASCSLHQLCLPMGLDETDMQRLDQIIGRRRRIKRD 86
           SLP  A+    SP PV L AL+A C++CS+HQLCLPMGLD+ DMQRL+Q+I RRR++KRD
Sbjct: 3   SLP--ASTHKHSPPPVNLHALRASCSACSMHQLCLPMGLDQGDMQRLEQVINRRRKVKRD 60

Query: 87  QSLYRMGDAFDMLYAIRLGHFKTYQVNSNGSQQITGFQMAGELLGMDAIGTGRHQCEAVA 146
           ++LYR+ D FDMLYAIRLGHFKT+Q N NG QQITGFQMAGELLGMDAIG G H CEAVA
Sbjct: 61  ETLYRLNDKFDMLYAIRLGHFKTFQHNPNGGQQITGFQMAGELLGMDAIGAGHHLCEAVA 120

Query: 147 LEDSEVCEIPFSRLEELFQDMPVLLRQFHRIMSKEISREQGVMLTLNSMSAQQKLAAFLV 206
           LEDSEVCEIPF+ LE+LF+DMP LLRQFHR+MS EISREQ VMLTL SM+AQQK+AAFL+
Sbjct: 121 LEDSEVCEIPFASLEDLFRDMPTLLRQFHRMMSLEISREQRVMLTLGSMTAQQKMAAFLL 180

Query: 207 NLSTRYATRGYSASRFQLRMTREEIGNYLGLAVESVSRLLSNLKKNGVVD 256
           NLS+RY +RGYS++RFQLRMTREEIGNYLGLAVESVSRLL+N KK+GV++
Sbjct: 181 NLSSRYMSRGYSSTRFQLRMTREEIGNYLGLAVESVSRLLTNFKKSGVIE 230


>gi|300312495|ref|YP_003776587.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score =  309 bits (791), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 146/239 (61%), Positives = 188/239 (78%), Gaps = 10/239 (4%)

Query: 25  SPMSLPINAADSPSSPVPVLQALKA--------GCASCSLHQLCLPMGLDETDMQRLDQI 76
           +P++ P NAA +P +    L A +          C +C +HQLCLPMGLDE+DM+RLD+I
Sbjct: 8   TPITTPANAA-APLTHCSSLTAAREAAASSALRSCTACGMHQLCLPMGLDESDMKRLDKI 66

Query: 77  IGRRRRIKRDQSLYRMGDAFDMLYAIRLGHFKTYQVNSNGSQQITGFQMAGELLGMDAIG 136
           IGRR+ + RD  LYR+GD F  LYA+R+GHFKTYQ N +G +QITGFQM GELLGMDAI 
Sbjct: 67  IGRRK-VARDDFLYRIGDRFTALYAVRVGHFKTYQENLDGDRQITGFQMPGELLGMDAIS 125

Query: 137 TGRHQCEAVALEDSEVCEIPFSRLEELFQDMPVLLRQFHRIMSKEISREQGVMLTLNSMS 196
           T +HQC+AVAL+DSEVCEIPF+RLE+LF  +P LLR FHRIMS EI+ EQ V++ L +M 
Sbjct: 126 TEQHQCDAVALQDSEVCEIPFARLEQLFGQIPHLLRHFHRIMSHEITSEQNVIMLLGNMR 185

Query: 197 AQQKLAAFLVNLSTRYATRGYSASRFQLRMTREEIGNYLGLAVESVSRLLSNLKKNGVV 255
           A+Q+ AAFLVNLS+RYA RGYS++RFQLRMTR+++GNYLGL +ES+SRL+S  +K G++
Sbjct: 186 AEQRFAAFLVNLSSRYAARGYSSTRFQLRMTRQDVGNYLGLTIESISRLISKFRKQGLL 244


>gi|300311696|ref|YP_003775788.1| Crp/Fnr family transcription
           regulator [Herbaspirillum seropedicae SmR1]
          Length = 272

 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 125/208 (60%), Gaps = 1/208 (0%)

Query: 51  CASCSLHQLCLPMGLDETDMQRLDQIIGRRRRIKRDQSLYRMGDAFDMLYAIRLGHFKTY 110
           C +C + + C P  L   +  + +Q++ RRRR+ R +  YR  D    ++ +RLG FKT 
Sbjct: 18  CRNCIVKKHCFPHDLSPEETAQFEQLVVRRRRVLRGEFAYRAHDECSKIFIVRLGSFKTV 77

Query: 111 QVNSNGSQQITGFQMAGELLGMDAIGTGRHQCEAVALEDSEVCEIPFSRLEELFQDMPVL 170
           +V+  G   +  F   G+LLG++      ++ + +ALEDS++CE+ F  LEEL + +P L
Sbjct: 78  RVSRYGGMDVIAFHHTGDLLGIEGASHSAYEVDTIALEDSQICELSFVGLEELSRKIPRL 137

Query: 171 LRQFHRIMSKEISREQGVMLTLNSMSAQQKLAAFLVNLSTRYATRGYSASRFQLRMTREE 230
            +Q  R +S E++  Q   L L + S +Q+ A FL++LS   +  G +++ F LRM+R +
Sbjct: 138 HQQVWRRLSNEVTLMQQQSLLLKARS-EQRFAFFLLDLSRISSRCGNASTEFSLRMSRTD 196

Query: 231 IGNYLGLAVESVSRLLSNLKKNGVVDXS 258
           IG +LGL  ES+SRL+S  +K G++D S
Sbjct: 197 IGLFLGLTNESMSRLISKFRKAGLIDVS 224


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 847,315
Number of extensions: 32841
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 3
Length of query: 297
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,217,395
Effective search space: 258087740
Effective search space used: 258087740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)