BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0012.p
         (208 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311854|ref|YP_003775946.1| type 2 phosphatidic acid phosph...   197   7e-52

>gi|300311854|ref|YP_003775946.1| type 2 phosphatidic acid
           phosphatase family protein [Herbaspirillum seropedicae
           SmR1]
          Length = 257

 Score =  197 bits (500), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 132/202 (65%), Gaps = 14/202 (6%)

Query: 19  GALVDLDQHIADWLHARATAGLTQAILAYTHLHGTIGVLAMSAVLAFFLFRQRPRASAWL 78
           GAL  LDQ +ADW + RA + LT+ +L YTHLHGTIGVL M  +L   + R   R   W+
Sbjct: 58  GALTRLDQQLADWFNQRAFSPLTELVLGYTHLHGTIGVLVMGGLLLRHMVR--ARQWPWV 115

Query: 79  LTLAVTVPGGMLFNYWLKFQFQRVRPHFEQPILVLHSYSFPSGHTIGATLFYSVLAAWLA 138
           + L + +PGGML NY LK  F R+RP FE P+LVLHSYSFPSGHTIGATL Y++LAA++ 
Sbjct: 116 IDLLLVLPGGMLLNYLLKHLFARLRPSFEDPLLVLHSYSFPSGHTIGATLLYTMLAAYVL 175

Query: 139 SLP----------GNHARRPAIIIITTILTM--MTALSRLYLGAHFFSDVLAAMLEGLAW 186
           + P          G   R   + +I   L M  +TA SR+YLGAHF SDVL AML G AW
Sbjct: 176 NQPALSEALSRRLGGSQRGVQLAVIGAALLMVALTAFSRVYLGAHFLSDVLGAMLLGTAW 235

Query: 187 FALWATIIFTVQRHQLARKSSN 208
           FALW T++FT+QRH      SN
Sbjct: 236 FALWTTVVFTLQRHYYGGTRSN 257


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 668,711
Number of extensions: 24886
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,236,335
Effective search space: 157014545
Effective search space used: 157014545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)