BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0006.p
         (259 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311954|ref|YP_003776046.1| cobalamin biosynthesis protein ...   276   2e-75

>gi|300311954|ref|YP_003776046.1| cobalamin biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score =  276 bits (705), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 151/227 (66%), Positives = 173/227 (76%), Gaps = 6/227 (2%)

Query: 1   VAGTQAAIQALPQLRLREHG-VARVVVAAPAYAEHAHRWQQAGHAMREVGYAGLSDVIDA 59
           VAGTQAAIQALPQLRLR  G  A+VVVAAP YAEHAH W++ GH + EV Y  L   + +
Sbjct: 70  VAGTQAAIQALPQLRLRRDGRPAQVVVAAPIYAEHAHCWRRCGHEVSEVPYEALDQAVQS 129

Query: 60  VDAVDACDVMVVCNPNNPTGERVAPDVLLGWAQRLAARGGWLVVDEAFGDTTPHMSVAAH 119
                +C V+V+CNPNNPTG  V P+ LL WA +LA RGGWLVVDEAFGDT  H SVAAH
Sbjct: 130 ----PSCQVLVLCNPNNPTGALVEPERLLRWAAQLAERGGWLVVDEAFGDTLTHYSVAAH 185

Query: 120 TGAQAGLIVLRSVGKFFGLAGVRLGFVAAQEHILNGLRELLGPWSVSGPAQQIGIAALRD 179
           T  Q GLIVLRSVGKFFGLAG+RLGFVAA   +L  L + LGPW++SGPAQQIG AALRD
Sbjct: 186 T-PQTGLIVLRSVGKFFGLAGLRLGFVAAAPALLAELADWLGPWTISGPAQQIGCAALRD 244

Query: 180 VDWQQSTRARLLAAGQRLQRLLAEYGIDSGGSAMYQWWPEPHAVAFH 226
            DWQ  TR RL A GQRLQ+LLA +GI + G+A++QWWPEP A AFH
Sbjct: 245 RDWQAQTRQRLQAQGQRLQQLLARHGIAAQGTALFQWWPEPQAQAFH 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 788,138
Number of extensions: 30229
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,226,865
Effective search space: 215928240
Effective search space used: 215928240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)