BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0005.p
         (326 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311955|ref|YP_003776047.1| cobalamin biosynthesis CobD/Cbi...   360   e-101
gi|300310842|ref|YP_003774934.1| cobalamin biosynthesis transmem...   114   1e-26

>gi|300311955|ref|YP_003776047.1| cobalamin biosynthesis CobD/CbiB
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  360 bits (925), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/301 (70%), Positives = 235/301 (78%), Gaps = 3/301 (0%)

Query: 13  LALLMAAGVALDWLLGETRRWHPLVGFGRYVQCLERRLNRQPGSYARGVFAWLLAVLPPV 72
           LA+LMA G+ALD  LGE RRWHPLVGFGR  Q +E  LNR PG   RGV AW LAVLPPV
Sbjct: 10  LAVLMALGLALDLRLGEARRWHPLVGFGRLAQRIEAALNRAPGLRLRGVLAWALAVLPPV 69

Query: 73  ALACAATILLARQSLWLAAAWHVLLLYFCIGLRSLRDHVMPIAAALKDGDLAAARALTGR 132
            LA     L+A+   WLAA  H  LLYFCIGLRSLR+H +PIA AL  G+LA AR LT  
Sbjct: 70  LLA---AWLIAQTPWWLAALLHAGLLYFCIGLRSLREHTLPIAQALGAGELAQARRLTAW 126

Query: 133 IVSRDTTQSQETDLAKAAVESLLENGNDAVFGTLFWFAVAGGPGALLFRLANTLDAMWGY 192
           IVSRDT  + E +LAKA VESLLENGNDAVFGTLFWF +AGGPGALLFRL+NTLDAMWGY
Sbjct: 127 IVSRDTRSASEQELAKAGVESLLENGNDAVFGTLFWFLLAGGPGALLFRLSNTLDAMWGY 186

Query: 193 RTSRFLAFGCAAARLDDALNWIPARLTALSYAALGNWRQARTCWHEQAPAWSSPNAGPVM 252
           R +RFL FG AAAR+DDALNW PARLTALSYA LG  RQA  CW EQAPAWSSPNAGPVM
Sbjct: 187 RNARFLYFGWAAARIDDALNWCPARLTALSYAVLGQRRQALACWKEQAPAWSSPNAGPVM 246

Query: 253 SSGAGALGLALGGAAIYDGEVEQRPPLGIGRDAVAGDIARAWTLVSRTAMLWLTVMLATA 312
           ++GAGALGLALGGAA+YDGEVEQRPPLG G      DI RAW LV+ +A LW+ V+ A A
Sbjct: 247 AAGAGALGLALGGAAVYDGEVEQRPPLGCGVAPQGADIVRAWRLVAMSAALWMAVVAAVA 306

Query: 313 M 313
           +
Sbjct: 307 L 307


>gi|300310842|ref|YP_003774934.1| cobalamin biosynthesis
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 319

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/246 (32%), Positives = 119/246 (48%), Gaps = 11/246 (4%)

Query: 67  AVLPPVALACAATILLARQSLWLAAAWHVLLLYFCIGLRSLRDHVMPIAAALKDGDLAAA 126
           A+  PVAL      LL   SL  A AW+VL++Y  +G R    +   I  AL  GD   A
Sbjct: 57  ALTVPVALVY---WLLLHVSLVAAFAWNVLVVYLTLGFRHYSHYFTSIQLALNSGDEMTA 113

Query: 127 RALTGRIVSRDTTQSQETDLAKAAVESLLENGNDAVFGTLFWFAVAGGPG-ALLFRLANT 185
           RAL      +DTT    +++++ A E  L   +  VFG  FWF +  GP  A+++R+A  
Sbjct: 114 RALLAEWTRQDTTGMDVSEISRIASERALITTHRHVFGVFFWFLMPVGPALAVMYRVAEY 173

Query: 186 LDAMWGYRTS-RFLAFGCAAARLDDALNWIPARLTALSYAALGNWRQARTCWHEQAPAWS 244
           L   W      +F AFG  AA+    ++WIPARLTA ++A +GN+  A   W   A  W 
Sbjct: 174 LSRAWNEPDHMKFEAFGRFAAQAFYWIDWIPARLTAAAFAVVGNFEDAIYAWRNFASRWD 233

Query: 245 SPNAGPVMSSGAGALGLALG------GAAIYDGEVEQRPPLGIGRDAVAGDIARAWTLVS 298
             +AG ++++G GA+G+  G         I   +      +    D + GD     TL S
Sbjct: 234 DESAGIILAAGGGAMGVRFGTEKEAAAGIILPADAATVDSMPEETDGLPGDTPSPRTLQS 293

Query: 299 RTAMLW 304
              ++W
Sbjct: 294 TVGLVW 299


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.136    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 804,333
Number of extensions: 27530
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 326
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 241
Effective length of database: 1,217,395
Effective search space: 293392195
Effective search space used: 293392195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)