BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0004.p
         (204 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311956|ref|YP_003776048.1| bifunctional cobinamide kinase/...   215   2e-57

>gi|300311956|ref|YP_003776048.1| bifunctional cobinamide
           kinase/cobinamide phosphate guanylyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score =  215 bits (548), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/199 (63%), Positives = 146/199 (73%), Gaps = 11/199 (5%)

Query: 17  TTRTLVFGGARSGKSAQAERLAAAA-------GKPVIYIATA---AVGDD-EMAARIALH 65
           T R+L+FGGARSGKSA AERLA AA       G  ++Y+ATA   A GDD EM  RI  H
Sbjct: 6   TRRSLIFGGARSGKSAHAERLALAALASQAQAGGEILYLATASRSASGDDAEMQQRIDQH 65

Query: 66  RQQRSAQYAHWETVEEQLALGDAIARASRPGNVVLVDCLTVWLSNLLFSEPKEYPEIGRI 125
           +Q+RS     W TVEE LALG A+   ++PG VVLVDCLTVWL+NLLF++  E+P+ G I
Sbjct: 66  QQRRSELGGRWRTVEEPLALGAALRTHAQPGQVVLVDCLTVWLANLLFADGIEFPDAGPI 125

Query: 126 EAPARFAAERERFLQALSQAPGDVVLVSNEVGMGIVPQGAISRWFVDEAGRLNQAVAAIC 185
             P  F  +RE FL AL +  G+V+LVSNEVGMGIVPQGAISRWFVDEAGRLNQAVAA C
Sbjct: 126 VPPPAFTRQREDFLLALQEVRGEVILVSNEVGMGIVPQGAISRWFVDEAGRLNQAVAAQC 185

Query: 186 ERVQFVAAGLPLELKGRAC 204
           ERVQ+VAAGLPL LK   C
Sbjct: 186 ERVQWVAAGLPLSLKDLPC 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 589,799
Number of extensions: 22393
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,236,335
Effective search space: 152069205
Effective search space used: 152069205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)