BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0003.p
         (218 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311957|ref|YP_003776049.1| oxygen-insensitive nitroreducta...   320   8e-89

>gi|300311957|ref|YP_003776049.1| oxygen-insensitive nitroreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  320 bits (819), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 155/214 (72%), Positives = 177/214 (82%)

Query: 3   HRYSQADIDTVYRVIAERRDIRHFLPEPLDPALLQRLLEAAHLGPSVGFMQPWRFIRITE 62
           HRY+Q +I+ +YRVI ERRD+RHFLP+ + P LLQRLL+AAH  PSVGFMQPWRF+RI  
Sbjct: 4   HRYAQPEIEAIYRVIRERRDMRHFLPDAVAPELLQRLLQAAHHAPSVGFMQPWRFLRIRS 63

Query: 63  RSRRDAIHALVEQERVLTAQALHEREDEFMRLKVEGIRECGELLVAALMDDRERHVFGRR 122
            + R  IHALVEQER+ TAQAL +RE EFMRLKVEGI ECGE+LVAALMD RERHVFGRR
Sbjct: 64  AALRRQIHALVEQERIATAQALGQREQEFMRLKVEGILECGEVLVAALMDQRERHVFGRR 123

Query: 123 TLPEMDLASVACAIQNMWLAARAEGIGMGWVSLFDAGKLATLLAMPAGAKPVAVICLGHV 182
           T+P+MDLAS++CA+QNMWLAARAEG+GMGWVSLFD   LA LL MP GA PVAV+CLGHV
Sbjct: 124 TMPQMDLASLSCALQNMWLAARAEGLGMGWVSLFDPAALAQLLRMPDGAAPVAVLCLGHV 183

Query: 183 REFYARPMLEQEGWAARQSLDDLVFSDAWGNKEK 216
             FY +PMLEQE WAARQ L DLVF D W   E+
Sbjct: 184 PAFYDKPMLEQEQWAARQPLADLVFDDHWPAGEE 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 712,091
Number of extensions: 29775
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,231,600
Effective search space: 167497600
Effective search space used: 167497600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)