BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0001.p
         (86 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311956|ref|YP_003776048.1| bifunctional cobinamide kinase/...    61   2e-11

>gi|300311956|ref|YP_003776048.1| bifunctional cobinamide
           kinase/cobinamide phosphate guanylyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score = 61.2 bits (147), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 36/52 (69%)

Query: 1   MAARIALHRQQRSAQYAHWETVEEQLALGDAIARASRPGNVVLVDCLTVWLS 52
           M  RI  H+Q+RS     W TVEE LALG A+   ++PG VVLVDCLTVWL+
Sbjct: 58  MQQRIDQHQQRRSELGGRWRTVEEPLALGAALRTHAQPGQVVLVDCLTVWLA 109


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.131    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 257,748
Number of extensions: 8059
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 86
Length of database: 1,619,870
Length adjustment: 56
Effective length of query: 30
Effective length of database: 1,354,710
Effective search space: 40641300
Effective search space used: 40641300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 123 (52.0 bits)