BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0011.p
         (384 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312036|ref|YP_003776128.1| hypothetical protein Hsero_2724...   464   e-132
gi|300310700|ref|YP_003774792.1| dihydrodipicolinate synthase/N-...    57   3e-09

>gi|300312036|ref|YP_003776128.1| hypothetical protein Hsero_2724
           [Herbaspirillum seropedicae SmR1]
          Length = 370

 Score =  464 bits (1195), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/342 (66%), Positives = 260/342 (76%), Gaps = 21/342 (6%)

Query: 34  LDPXRASGAGVLMGLLYQAPLGCTPREALVRWAEVGVADSIYKMFPVNYKIFNKPGQGAR 93
            D   ASGAGVLMGLLY AP    PREAL++WAEVGVADSIYK+FPVNYK+F KPG  A 
Sbjct: 38  FDVISASGAGVLMGLLYTAPRDVGPREALMKWAEVGVADSIYKLFPVNYKVFKKPGAQAE 97

Query: 94  SFRDQVPAQMPQMPQMPQLPQMPQLAGLPNMAGAAGNPFLDVFTQRFAEASGAWNDWMHL 153
           S+R+ + AQM Q+P                  G   + F D+FT+ FA+AS  WNDWMHL
Sbjct: 98  SYRESMLAQMQQLP------------------GLGAHAFTDMFTRHFADASAKWNDWMHL 139

Query: 154 MLSAMSPSDLSSKSLGLCAHHPFLEQAIDFDAIARMKPAFYINAYNMSKSEMQIWDKGEI 213
           ++SA+SPSDL S SLGLCAH PFLEQ+IDF A+  M+P FYINAYN+ +  MQIW+K +I
Sbjct: 140 LMSALSPSDLHSGSLGLCAHLPFLEQSIDFTAVPAMRPEFYINAYNIDRHRMQIWNKDQI 199

Query: 214 APIHVRAALSFPFLYPPTEIGGDDYIEGAALDTLNFDPLRTQGVDA--GKHDDIDTLVVL 271
            P HVRA+LSFPFLY PTEI G+ YIEGAALDTLNF P    G D       D+DTLVVL
Sbjct: 200 TPAHVRASLSFPFLYAPTEIDGEHYIEGAALDTLNFTPF-IAGEDGSPAPAGDVDTLVVL 258

Query: 272 DILGEDRLIRKPRNLYDAWVRSIITPLVKISKTEMRLFELEHNTHPDTGEPLRRLLKVDL 331
           DILGEDRLIRKPRNLYDAWVRSIITPLVKISK E RLFELEHNT   TG+P R++LKVDL
Sbjct: 259 DILGEDRLIRKPRNLYDAWVRSIITPLVKISKAEQRLFELEHNTDAATGKPRRQVLKVDL 318

Query: 332 MSGIPEEHWPEVLDWSASNMQLLFDVGYRAGKEFCREHGESL 373
           M G+PE HWP+VLDWS+SNMQLLFDVGYRAG  FCREHG+ L
Sbjct: 319 MEGVPESHWPQVLDWSSSNMQLLFDVGYRAGVAFCREHGDVL 360


>gi|300310700|ref|YP_003774792.1| dihydrodipicolinate
           synthase/N-acetylneuraminate lyase [Herbaspirillum
           seropedicae SmR1]
          Length = 306

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 29/36 (80%)

Query: 1   MKEGGIIKSDAVRHPLAAMHPSTREGLIRIARRLDP 36
           M EGG+IKSD +RHP   +HP  REGL+R+ARRLDP
Sbjct: 264 MLEGGVIKSDMLRHPQPPLHPKVREGLLRVARRLDP 299


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,194,474
Number of extensions: 47765
Number of successful extensions: 115
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 2
Length of query: 384
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,207,925
Effective search space: 358753725
Effective search space used: 358753725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)