BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0009.p (468 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312035|ref|YP_003776127.1| methyl-accepting chemotaxis tra... 582 e-167 gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis pro... 390 e-110 gi|300310620|ref|YP_003774712.1| methyl-accepting chemotaxis tra... 368 e-103 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 344 8e-96 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 343 2e-95 >gi|300312035|ref|YP_003776127.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 548 Score = 582 bits (1500), Expect = e-167, Method: Compositional matrix adjust. Identities = 333/460 (72%), Positives = 385/460 (83%), Gaps = 8/460 (1%) Query: 5 FDDVVAKYEKEQLFDDTDRKMLEADKVNMEAYRKALIPFFAAAHAGDMDGVRATLAAGSP 64 D+ A YE++ +FD+ DR +++ADK N+EAYRKAL+PFFAAA+A DMDGVRATL AG+P Sbjct: 90 LDEEFAHYERDLIFDEKDRALIQADKANIEAYRKALVPFFAAAYANDMDGVRATLQAGTP 149 Query: 65 LALSAAGVKKGIDDHIAYNGKLVDDVRAESIAAYEFAFKSMVAVIVVAFLLTGTLALTLY 124 LA+SAA KKG +DHI K++D ++ ES AY FA ++M+AV+VVA LLTG L L + Sbjct: 150 LAISAAAAKKGFEDHILIGRKMIDTIKQESDEAYAFALRTMIAVVVVAVLLTGLLGLQVV 209 Query: 125 RNISGSLRNIRNTFEEVSASLDLSQPMRVDRMDEIGHAATAFNKLRARIVDVIGTVRTST 184 R++ SL I++TFE VS +LDLS+P+ V+RMDEIG A AFNKL ARIVDV+ T RTST Sbjct: 210 RSVIRSLGKIQHTFEHVSQTLDLSRPVPVERMDEIGRTAAAFNKLLARIVDVVATTRTST 269 Query: 185 DSVSVAARQIAVGNTDLSSRTEQQAASLEETASSLEQLTSVVKQNTENAKQANQLALSAS 244 DSV+VAARQIA GN DLS+RTEQQAA+LEE+ASSLEQLTSVV QNT+NA+QAN+LA SAS Sbjct: 270 DSVTVAARQIAAGNADLSARTEQQAAALEESASSLEQLTSVVLQNTQNARQANELAQSAS 329 Query: 245 HIASQGGDVVRQVVDTMNSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGR 304 HIASQGGDVVRQVVDTMNSINESSRKIVDII+VIDGIAFQTNILALNAAVEAARAGEQGR Sbjct: 330 HIASQGGDVVRQVVDTMNSINESSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGR 389 Query: 305 GFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVGSGSKLVQQAGTTMSDIVNSVQKVTD 364 GFAVVASEVRSLAQRSAAAAKEIK LIDDSV KVGSGSKLV+QAGTTMSDIV+SVQ+VT Sbjct: 390 GFAVVASEVRSLAQRSAAAAKEIKELIDDSVSKVGSGSKLVEQAGTTMSDIVDSVQRVTV 449 Query: 365 IVGEIASASEEQSSGISQVNQAVSQMDDVTQQNAALVEEAAAAAQALQDQAETLEQVVSV 424 IVG+IA+ASEEQS+GISQVNQA++QMD TQQNAALVEEAAAAA ALQ QAETLE VV+V Sbjct: 450 IVGDIANASEEQSAGISQVNQAIAQMDQGTQQNAALVEEAAAAAHALQQQAETLESVVAV 509 Query: 425 FKLDAARLVTTAASQSAKRAIDITPSAVRL-VSPAPRRLE 463 FKL+ RL + I SA RL SPA R+ E Sbjct: 510 FKLE-GRL------NGSIPVIQAPASAARLPASPAARQAE 542 >gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 544 Score = 390 bits (1003), Expect = e-110, Method: Compositional matrix adjust. Identities = 229/429 (53%), Positives = 295/429 (68%), Gaps = 18/429 (4%) Query: 6 DDVVAKYEKEQLFDDTDRKMLEADKVNMEAYRKALIPFFAAAHAGDMDGVRATLAAGSPL 65 +D + KYE+EQL D TD+++L A +V+ + + K+L A+AG + RA LA P+ Sbjct: 93 EDALQKYEQEQLADATDKELLRAVRVSYQEFDKSLAEALKLANAGQWNEARALLANNQPV 152 Query: 66 ALSAAGVKKGIDDHIAYNGKLVDDVRAESIAAYEFAFKSMVAVIVVAFLLTGT------- 118 + K + + AYN K+ S A A ++M A + A L++ Sbjct: 153 I---DRLNKAMTELRAYNEKI-------SQAGAHRAQETMAAARLHAILISAAVIAVVTL 202 Query: 119 LALTLYRNISGSLRNIRNTFEEVSASLDLSQPMRVDRMDEIGHAATAFNKLRARIVDVIG 178 + L + R I+ SL E + A DL++ + DEIGH A K+ +V ++ Sbjct: 203 MGLLIARKIARSLAEAVELAETI-AEGDLTREIDTSSTDEIGHLMAAMAKMNRNLVTIVA 261 Query: 179 TVRTSTDSVSVAARQIAVGNTDLSSRTEQQAASLEETASSLEQLTSVVKQNTENAKQANQ 238 TVRT ++V+ A+ QIA GN DLS+RTEQQA+SLE+TA++ E+LTS VKQN ENA QA+Q Sbjct: 262 TVRTGVNTVAAASSQIATGNMDLSARTEQQASSLEQTAAATEELTSTVKQNAENALQADQ 321 Query: 239 LALSASHIASQGGDVVRQVVDTMNSINESSRKIVDIISVIDGIAFQTNILALNAAVEAAR 298 LA +AS IA++GG+VV+QVV TM I SS I DIISVIDGIAFQTNILALNAAVEAAR Sbjct: 322 LASAASGIAAEGGEVVKQVVTTMEEIRSSSLNIADIISVIDGIAFQTNILALNAAVEAAR 381 Query: 299 AGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVGSGSKLVQQAGTTMSDIVNS 358 AGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LIDDSV KV +GS+LV AG TM +V S Sbjct: 382 AGEQGRGFAVVATEVRSLAQRSASAAKEIKQLIDDSVSKVENGSQLVMSAGNTMQQVVES 441 Query: 359 VQKVTDIVGEIASASEEQSSGISQVNQAVSQMDDVTQQNAALVEEAAAAAQALQDQAETL 418 V++VTD+V EI++AS EQS GI QVNQA+S MD TQ+NAALVEEA AAAQ+LQ+QA L Sbjct: 442 VRRVTDVVTEISAASREQSLGIEQVNQAISHMDQSTQENAALVEEATAAAQSLQEQARQL 501 Query: 419 EQVVSVFKL 427 E+ V+VFKL Sbjct: 502 ERAVNVFKL 510 >gi|300310620|ref|YP_003774712.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 573 Score = 368 bits (945), Expect = e-103, Method: Compositional matrix adjust. Identities = 207/365 (56%), Positives = 271/365 (74%), Gaps = 15/365 (4%) Query: 102 FKSMVAVIVVAFLLTGTLALTLY------RNISGSLRNIRNTFEEVSASLDLSQPMRVDR 155 ++++ V+ +L G +AL L+ R + G R++ + AS DLS + + Sbjct: 192 IRTLLLVLTFGGVLFG-IALGLFISRNLTRQLGGEPRDVAAA-ADAIASGDLSTHIDISH 249 Query: 156 MDEIGHAATAFNKLRARIVDVIGTVRTSTDSVSVAARQIAVGNTDLSSRTEQQAASLEET 215 + G +A + ++ + V+ TVRTS++S++ +RQIA GN DLS+RTEQQA++LEET Sbjct: 250 AAQ-GSVVSAMHMMQGSLRKVVQTVRTSSESIATGSRQIATGNLDLSARTEQQASALEET 308 Query: 216 ASSLEQLTSVVKQNTENAKQANQLALSASHIASQGGDVVRQVVDTMNSINESSRKIVDII 275 ASS+E+LTS VK N NA+ A ++A +AS +A +GG+VV QVVDTM++INESSRK+ DII Sbjct: 309 ASSMEELTSTVKHNASNAQNAKEMAATASTVAQEGGEVVAQVVDTMSAINESSRKMADII 368 Query: 276 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSV 335 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK LI+DSV Sbjct: 369 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKALIEDSV 428 Query: 336 DKVGSGSKLVQQAGTTMSDIVNSVQKVTDIVGEIASASEEQSSGISQVNQAVSQMDDVTQ 395 DKV G++L QAGTTMS IV + KVT I+GEI++AS EQ++GI Q+NQA+ QMDDVTQ Sbjct: 429 DKVTVGARLADQAGTTMSGIVENAGKVTSIIGEISAASTEQTAGIEQINQAIMQMDDVTQ 488 Query: 396 QNAALVEEAAAAAQALQDQAETLEQVVSVFKLDAARLVTTAASQSAKRAIDITPSAVRLV 455 QNA+LVEEAAAA++ALQDQA+ L Q+VS+F L T Q A R ITP+A + + Sbjct: 489 QNASLVEEAAAASRALQDQADALAQIVSIFNLGH----TAIGMQDAPRT--ITPTAPKTI 542 Query: 456 SPAPR 460 + APR Sbjct: 543 AGAPR 547 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 344 bits (883), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 206/326 (63%), Positives = 258/326 (79%), Gaps = 6/326 (1%) Query: 104 SMVAVIVVAFLLTGTLALTLYRNISGSLRNIRNTFEEV-SASLDLSQPMRVDRMDEIGHA 162 +++A++ A LL+ T+ L R L +RN EE+ S DL++ + DE+ Sbjct: 274 AVLAIVASAILLSYTITRLLRR-----LGVVRNAMEEIASGDGDLTRRLDTSGKDELAQI 328 Query: 163 ATAFNKLRARIVDVIGTVRTSTDSVSVAARQIAVGNTDLSSRTEQQAASLEETASSLEQL 222 + AFN +I + +R +++SV V++ +IA GN DLS+RTEQQA SLEETAS++E+L Sbjct: 329 SRAFNHFADKISRTLLDIRRASESVKVSSSEIASGNMDLSARTEQQAGSLEETASAMEEL 388 Query: 223 TSVVKQNTENAKQANQLALSASHIASQGGDVVRQVVDTMNSINESSRKIVDIISVIDGIA 282 TS VKQN +NA+QANQLA+SAS +A GG VV QVV TM+SINESSRKIVDIISVIDGIA Sbjct: 389 TSTVKQNADNARQANQLAVSASDVAVHGGQVVGQVVATMSSINESSRKIVDIISVIDGIA 448 Query: 283 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVGSGS 342 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LIDDSV KV +GS Sbjct: 449 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKGLIDDSVQKVETGS 508 Query: 343 KLVQQAGTTMSDIVNSVQKVTDIVGEIASASEEQSSGISQVNQAVSQMDDVTQQNAALVE 402 +LV QAG+TM ++V+SV++VTDIVGEI++AS+EQSSGI++V AV+QMD+ TQQNAALVE Sbjct: 509 QLVAQAGSTMEEVVSSVRRVTDIVGEISAASQEQSSGITEVGNAVNQMDEATQQNAALVE 568 Query: 403 EAAAAAQALQDQAETLEQVVSVFKLD 428 +AAAAA++LQ+QA L VV+ FKLD Sbjct: 569 QAAAAAKSLQEQAAHLAAVVAGFKLD 594 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 343 bits (880), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 220/385 (57%), Positives = 272/385 (70%), Gaps = 3/385 (0%) Query: 76 IDDHIAYNGKLVDDVRAESIAAYEFAFKSMVAVIVVAFLLTGTLALTLYRNISGSLRNIR 135 ID A N K D ++ A Y A ++ + L LA+ + R I+ L Sbjct: 164 IDKLAAVNDKGADISNKQADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAV 223 Query: 136 NTFEEVSASLDLSQPMRVDRMDEIGHAATAFNKLRARIVDVIGTVRTSTDSVSVAARQIA 195 + + V+ DL+ + DE G A + +V ++G VR T +++ A+ +IA Sbjct: 224 SVAQRVAGG-DLTTRIEPAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIA 282 Query: 196 VGNTDLSSRTEQQAASLEETASSLEQLTSVVKQNTENAKQANQLALSASHIASQGGDVVR 255 GN DLSSRTE+QA+SLEETAS++E+LTS VKQN +NA+QANQLA+SAS +ASQGG VV Sbjct: 283 SGNLDLSSRTEEQASSLEETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVN 342 Query: 256 QVVDTMNSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRS 315 QVVDTM SIN SSRKI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRS Sbjct: 343 QVVDTMGSINASSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRS 402 Query: 316 LAQRSAAAAKEIKTLIDDSVDKVGSGSKLVQQAGTTMSDIVNSVQKVTDIVGEIASASEE 375 LAQRSA AAKEIK LI+ SV +V GSKLV++AG TMS++V SV++VTDIVGEI+SAS+E Sbjct: 403 LAQRSAGAAKEIKELIEGSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQE 462 Query: 376 QSSGISQVNQAVSQMDDVTQQNAALVEEAAAAAQALQDQAETLEQVVSVFKLDAARLVTT 435 QS GI QVN A++QMD+VTQQNAALVEEAAAAAQ+LQ+QAETL Q V FKL+ + Sbjct: 463 QSEGIEQVNLAIAQMDEVTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLE--QQPDE 520 Query: 436 AASQSAKRAIDITPSAVRLVSPAPR 460 AS+ RA + +A +PA R Sbjct: 521 PASRPPVRAASVARTAAVRHAPATR 545 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.125 0.317 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 964,014 Number of extensions: 29503 Number of successful extensions: 508 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 229 Number of HSP's successfully gapped: 72 Length of query: 468 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 379 Effective length of database: 1,198,455 Effective search space: 454214445 Effective search space used: 454214445 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)