BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0002.p (478 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis pro... 653 0.0 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 340 2e-94 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 331 6e-92 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 330 1e-91 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 313 2e-86 >gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 554 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/473 (73%), Positives = 393/473 (83%), Gaps = 4/473 (0%) Query: 6 RPA-ISVAARLGISFAIVLAMMAALTVLSIMKVNAIEGSLSTISDDNNVKQRYAINFRGS 64 +PA +SVA RL +SFA+VLAMM LTV+SI +VNAI SL+T+SDDNNVKQRYAINFRGS Sbjct: 7 KPASLSVATRLALSFALVLAMMLVLTVVSISRVNAINDSLTTVSDDNNVKQRYAINFRGS 66 Query: 65 VHDRAIALRDLTLVGDAEVKDVIGLIGKLDNDYQQSAQPLDAIFSGEKGKNVRAEERADL 124 VHDRAIALRDLTLVGD E+KDV LI KLD DYQ+SA+ LD +F+G + VR EERA L Sbjct: 67 VHDRAIALRDLTLVGDTELKDVSALISKLDADYQRSAKLLDEMFAGMQ---VRPEERASL 123 Query: 125 AAIKAIEARAMPLVQRVIAARTSGDTDGARQIMLQQGKPAFVEWLASINKFIDLQEQMTQ 184 +IKA+EARAMPL +VIAAR+SGD +GARQ+ML Q KPAFV+WLA+IN FID++E M+Q Sbjct: 124 DSIKAVEARAMPLAAKVIAARSSGDVEGARQLMLSQAKPAFVDWLAAINHFIDMEESMSQ 183 Query: 185 VESAHARNLAHGFQALMLVLLAVAMATGVVLATLITRHIRRALGAEPAQVRELAFAVDRG 244 ESA AR +A F+A MLVLLA A+ G VLA LITR IR ALGAEP +V+ELA AVDRG Sbjct: 184 AESAKARTVAREFKAFMLVLLAAALVAGTVLAMLITRSIRGALGAEPDEVKELALAVDRG 243 Query: 245 ELYHAIEQDKDLGKGHESIMAALSEMSSNLRRTVTEVRDAASDVTEISAQIAEGNRDLAS 304 ELYHA SIMA LSEMS NLR TVT VRDAA V IS+QIA GNRDLA+ Sbjct: 244 ELYHAAALPLAGKTRARSIMATLSEMSGNLRHTVTRVRDAADGVATISSQIAAGNRDLAA 303 Query: 305 RTEDQAASLEETASAMEQLTSTVKQNDDNARQANQLARNASVIAMQGGAIVGQVVHTMDS 364 RTEDQAASLEETASAMEQLT+TVKQND++ARQANQLA NAS IA QGGAIV VV TM + Sbjct: 304 RTEDQAASLEETASAMEQLTATVKQNDNHARQANQLAHNASEIARQGGAIVDNVVDTMAA 363 Query: 365 INTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSAA 424 IN SSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRS+AA Sbjct: 364 INVSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAA 423 Query: 425 AKEIKSLIDDSVEKVDTGAKLVGQAGETMEQIVASVKHVTDVVGEISAASHEQ 477 AKE+K LIDDSV+ V+ G LV QAG+TMEQIVASV+ VTDV+GEIS+ASHEQ Sbjct: 424 AKEVKQLIDDSVQNVENGTHLVEQAGQTMEQIVASVQQVTDVMGEISSASHEQ 476 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 340 bits (871), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 229/479 (47%), Positives = 302/479 (63%), Gaps = 31/479 (6%) Query: 9 ISVAARLGISFAIVLAMMAALTVLSIMKVNAIEGSLSTISDDNNVKQRYAINFRGSVHDR 68 + VA RL FA ++A++A ++V + +K+N I ++ I +D +K R+A + R V+++ Sbjct: 8 LKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGVNEQ 67 Query: 69 AIALRDLTLVGDAEVKDVI-GLIGKLDNDYQQSAQPLDAIFS------GEKGKNVRAEER 121 LR + + D E + +L+ +Q+ + LD I + G+K E R Sbjct: 68 IKYLRGIAI--DIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKALDEAR 125 Query: 122 ADLAAIKAIEARAMPLVQRVIAARTSGDTDGARQIMLQQGKPAFVEWLASINKFIDLQEQ 181 A A +A + LV+ +G++ A + +L++ +LA F D Q+ Sbjct: 126 I---AFDASKADFLALVK-------AGNSTSADEYVLRKITDTQNNYLALARAFADSQDA 175 Query: 182 MTQVESAHARNLAHGFQALMLVLLAVAMAT---GVVLATLITRHIRRALGAEPAQVRELA 238 Q E A A +A G A+ V LA +MA ++L L+ R I + L E +V E Sbjct: 176 QLQAEGAKA--VADGAMAIE-VTLACSMAAVLAAIILGYLMARSIVKPL-TEAVRVAE-- 229 Query: 239 FAVDRGELYHAIEQDKDLGKGHESIMAALSEMSSNLRRTVTEVRDAASDVTEISAQIAEG 298 V G+L IE G +M AL +M+ NL V+ VR +T S +IA G Sbjct: 230 -NVAAGDLTTRIEPHSRDETGQ--LMQALRKMNDNLIEIVSGVRRGTESITTASGEIASG 286 Query: 299 NRDLASRTEDQAASLEETASAMEQLTSTVKQNDDNARQANQLARNASVIAMQGGAIVGQV 358 N DL++RTE QA SLEETASAME++TSTV+QN DNARQANQ+A +AS IA+QGG IVG+V Sbjct: 287 NLDLSARTEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRV 346 Query: 359 VHTMDSINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLA 418 VHTMD IN SSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLA Sbjct: 347 VHTMDEINQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLA 406 Query: 419 QRSSAAAKEIKSLIDDSVEKVDTGAKLVGQAGETMEQIVASVKHVTDVVGEISAASHEQ 477 QRS+AAAKEIK+LI DSV KV+ G+ LV QAG TMEQ+V+SV+ VTD+V EISAAS EQ Sbjct: 407 QRSAAAAKEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQ 465 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 331 bits (849), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 209/474 (44%), Positives = 293/474 (61%), Gaps = 8/474 (1%) Query: 6 RPAISVAARLGISFAIVLAMMAALTVLSIMKVNAIEGSLSTISDDNNVKQRYAINFRGSV 65 + + + RLG+ FA V+ ++ +T I ++ ++G + + + N + +V Sbjct: 2 KSGMKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETV 61 Query: 66 HDRAIALRDLTLVGDAEVKDVIG-LIGKLDNDYQQSAQPLDAIFSGEKGKNVRAEERADL 124 +R+I+LR+L L E D+ I Y+ +AQ L +F+ + + EE+A L Sbjct: 62 GERSISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFA--ESSDTSDEEKAAL 119 Query: 125 AAIKAIEARAMPLVQRVIAARTSGDTDGARQIMLQQGKPAFVEWLASINKFIDLQEQMTQ 184 I A ++A L+ + + Q + +Q P W + L++Q+ + Sbjct: 120 PKIAAQASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNK 179 Query: 185 VESAHARNLAHG-FQALMLVLLAVAMATGVVLATLITRHIRRALGAEPAQVRELAFAVDR 243 E+A A +A+ + LML++ A+ + T V+ A +TRH+ R LG EP ++A + Sbjct: 180 -EAAEASAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAE 238 Query: 244 GELYHAIEQDKDLGKGHESIMAALSEMSSNLRRTVTEVRDAASDVTEISAQIAEGNRDLA 303 G+L A+ D G H+S+MAA+ M L V EVR + +T S++IA GN DL+ Sbjct: 239 GDL--AVVIDTRAGD-HDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLS 295 Query: 304 SRTEDQAASLEETASAMEQLTSTVKQNDDNARQANQLARNASVIAMQGGAIVGQVVHTMD 363 RTE QA +LEETAS+MEQL STVKQN +NA QAN LA AS +A+QGG+IV QVV TM Sbjct: 296 GRTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQ 355 Query: 364 SINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSA 423 SIN SS+K+ DI+ VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRS++ Sbjct: 356 SINASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAS 415 Query: 424 AAKEIKSLIDDSVEKVDTGAKLVGQAGETMEQIVASVKHVTDVVGEISAASHEQ 477 AAKEIK LI DSV KV+ G+KLV QAG TM IV S++ VTDV+ EI+ A+ EQ Sbjct: 416 AAKEIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQ 469 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 330 bits (847), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 221/483 (45%), Positives = 302/483 (62%), Gaps = 40/483 (8%) Query: 9 ISVAARLGISFAIVLAMMAALTVLSIMKVNAIEGSLSTISDDNNVKQRYAINFRGSVHDR 68 I ++ RL + FA+++ +M +T + + +++I S + I +D K A+ R +V+ Sbjct: 6 IKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRDNVNGA 65 Query: 69 AIALRDLTLVGDAEVKDVIGLIGKLDNDYQQSAQPLDAIFSGEKGKNVRAEERADLAAIK 128 A LR+ L+G +++ LD SA+ +A+ EK + Sbjct: 66 ARNLRN-ALLG----RNLEEATRYLDRSAANSAKTTEALGKMEKILST------------ 108 Query: 129 AIEARAMPLVQRVIAARTSGDT--DGARQIMLQQGK------------PAFVEWLASINK 174 AR L Q + AR++ +T D R+++ QQ K PA ++ +++ Sbjct: 109 ---ARGRELFQSIQEARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQ 165 Query: 175 FIDLQEQMTQVESAHARNLAHGFQALMLVLLAVAMATGVVLATLITRHIRRALGAEPAQV 234 F+ Q+ + + R+ A+ML L AVA+A V+ A L+TR I R L + Sbjct: 166 FVAFQKSLMEQSVTEGRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLN----EA 221 Query: 235 RELAFAVDRGELYHAIEQDKDLGKGHESIMAALSEMSSNLRRTVTEVRDAASDVTEISAQ 294 +A AV G+L I G +++AAL M+ +L R V+EVR + + SA+ Sbjct: 222 VSVASAVAAGDLTVQIGATSKDETG--ALLAALKSMNDSLHRIVSEVRQGSDTINTASAE 279 Query: 295 IAEGNRDLASRTEDQAASLEETASAMEQLTSTVKQNDDNARQANQLARNASVIAMQGGAI 354 IA GN DL+SRTE+QA +LEETASAME+LTSTVKQN DNARQAN LA AS +A+QGG++ Sbjct: 280 IATGNLDLSSRTEEQAGALEETASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSV 339 Query: 355 VGQVVHTMDSINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEV 414 VGQVV TM IN +SRKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EV Sbjct: 340 VGQVVQTMGEINDASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 399 Query: 415 RSLAQRSSAAAKEIKSLIDDSVEKVDTGAKLVGQAGETMEQIVASVKHVTDVVGEISAAS 474 R+LAQRS++AAKEIK+LIDDSV +VD G++LV QAG TM ++VASV+ VTDVV EISAAS Sbjct: 400 RTLAQRSASAAKEIKALIDDSVSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAAS 459 Query: 475 HEQ 477 +EQ Sbjct: 460 NEQ 462 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 313 bits (802), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 211/470 (44%), Positives = 284/470 (60%), Gaps = 14/470 (2%) Query: 9 ISVAARLGISFAIVLAMMAALTVLSIMKVNAIEGSLSTISDDNNVKQRYAINFRGSVHDR 68 + ++ RLG FA ++ +M + + + + + + I +D VK V+ Sbjct: 7 MKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKVNTG 66 Query: 69 AIALRDLTLVGDAEVKDVIGLIGKLDNDYQQSAQPLDAIFSGEKGKNV-RAEERADLAAI 127 A +LR+ + + E + + ++D Q ++ L + EK N R E LAA+ Sbjct: 67 ARSLRNAIMARNPEEQK--KYLDRMDTYTSQVSEHLAEM---EKRTNTPRGSEL--LAAL 119 Query: 128 KAIEARAMPLVQRVIAARTSGDTDGARQIMLQQGKPAFVEWLASINKFIDLQEQMTQVES 187 K A +V+ D A + + P ++ A++ + + Q + + Sbjct: 120 KQARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSA 179 Query: 188 AHARNLAHGFQALMLVLLAVAMATGVVLATLITRHIRRALGAEPAQVRELAFAVDRGELY 247 A + +MLVL VA+ + A LITR I R L + ++A AV G+L Sbjct: 180 ERASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLN----EAVQVATAVAAGDLT 235 Query: 248 HAIEQDKDLGKGHESIMAALSEMSSNLRRTVTEVRDAASDVTEISAQIAEGNRDLASRTE 307 IE G +++ AL M+ NL R V EVR + S +IA GN DL+SRTE Sbjct: 236 VQIEATSKDETG--ALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTE 293 Query: 308 DQAASLEETASAMEQLTSTVKQNDDNARQANQLARNASVIAMQGGAIVGQVVHTMDSINT 367 QA +LEETASAME+LTSTV+QN DNARQAN LA AS +A+QGG++VG+VV TM IN Sbjct: 294 QQAGALEETASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQIND 353 Query: 368 SSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSAAAKE 427 +SRKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS+AAAKE Sbjct: 354 ASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKE 413 Query: 428 IKSLIDDSVEKVDTGAKLVGQAGETMEQIVASVKHVTDVVGEISAASHEQ 477 IKSLID SVE+V++G++LVGQAG TME++VASVK VTDVV EI+AAS EQ Sbjct: 414 IKSLIDASVERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQ 463 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.128 0.332 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,104,313 Number of extensions: 39138 Number of successful extensions: 526 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 350 Number of HSP's successfully gapped: 71 Length of query: 478 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 389 Effective length of database: 1,198,455 Effective search space: 466198995 Effective search space used: 466198995 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)