BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0040.p
         (319 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309670|ref|YP_003773762.1| S-adenosyl-methionine-dependent...   521   e-149

>gi|300309670|ref|YP_003773762.1| S-adenosyl-methionine-dependent
           methyltransferase MraW protein [Herbaspirillum
           seropedicae SmR1]
          Length = 324

 Score =  521 bits (1342), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 272/317 (85%), Positives = 288/317 (90%)

Query: 1   MTLQSVPDLQHRTVLLDEAVDALAIEGGRADGVYLDGTFGRGGHSRKILERLSARGRLIA 60
           M LQ VP+LQHRTVLL+EAVDALAIEG RA+GVYLDGTFGRGGHSR IL RL  +GRLIA
Sbjct: 1   MNLQPVPELQHRTVLLEEAVDALAIEGERANGVYLDGTFGRGGHSRAILSRLGPQGRLIA 60

Query: 61  FDKDPMAIATAQTIADPRFAIVHDSFATLDEALAQHGVTQVDGVLMDLGISSPQVDDAAR 120
           FDKDP+AIATAQ IADPRF IVHDSFAT+D+ALA+ G+ +VDGVLMDLGISSPQVDDAAR
Sbjct: 61  FDKDPLAIATAQKIADPRFEIVHDSFATMDQALAERGIARVDGVLMDLGISSPQVDDAAR 120

Query: 121 GFSFRFDGPLDMRMDTTRGVSAAEWLATADEQTIAKVIREYGEERFALQIAKTIVARRAV 180
           GFSFR DGPLDMRMDTTRGVSAAEWLATADEQ IAKVIR+YGEERFALQIAK IVA RAV
Sbjct: 121 GFSFRLDGPLDMRMDTTRGVSAAEWLATADEQQIAKVIRDYGEERFALQIAKKIVAGRAV 180

Query: 181 EPISTTRQLAALVAQAVKTREKGKDPATRTFQAVRIFVNQELEELEIGLEKAFRQMAQYG 240
           EPIS+TRQLAALVAQAVKTREKGKDPATRTFQAVRIFVNQELEELE+GLEKAF QMAQ+G
Sbjct: 181 EPISSTRQLAALVAQAVKTREKGKDPATRTFQAVRIFVNQELEELEVGLEKAFAQMAQHG 240

Query: 241 RLVVISFHSLEDRIVKQFMASKAHVPQPDRRLPIRAVDLPQPLGKLHPRIKPSDAEVAAN 300
           RLVVISFHSLEDRIVKQFMASKAH PQPDRRLPIRAVDLPQ   +L PR+ PS  EV AN
Sbjct: 241 RLVVISFHSLEDRIVKQFMASKAHAPQPDRRLPIRAVDLPQAPARLLPRVMPSAGEVEAN 300

Query: 301 PRARSAVMRSLERTVEA 317
           PRARSAVMR LE  V A
Sbjct: 301 PRARSAVMRGLELIVAA 317


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 972,113
Number of extensions: 40319
Number of successful extensions: 175
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,217,395
Effective search space: 284870430
Effective search space used: 284870430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)