BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0038.p (590 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309672|ref|YP_003773764.1| cell division FtsI protein/peni... 1085 0.0 gi|300313947|ref|YP_003778039.1| cell division protein FtsI [Her... 120 4e-28 >gi|300309672|ref|YP_003773764.1| cell division FtsI protein/penicillin-binding protein 2 [Herbaspirillum seropedicae SmR1] Length = 592 Score = 1085 bits (2806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 525/590 (88%), Positives = 561/590 (95%), Gaps = 1/590 (0%) Query: 1 MPPRTNVAGGRVAASRGVAFSASPVLQVKMPAWRSRVVLFVLFMAFLTLAGRALWLQGMS 60 MPPRTN++GGRVAAS+GVAFS++P+LQVK+PAWRSR VLFVLF+AF+ L RALWLQG+S Sbjct: 4 MPPRTNLSGGRVAASKGVAFSSNPILQVKLPAWRSRFVLFVLFVAFVALVLRALWLQGVS 63 Query: 61 TDFLQKQGASRYARNSRLPATRGKITDRNGQVLASSVPVKAIWAIPDDVQEAPRDKLREL 120 TDFLQKQGASRYAR LPATRGKITDRNGQVLASSVPVKAIWAIP+DVQ AP+DKL +L Sbjct: 64 TDFLQKQGASRYARTLELPATRGKITDRNGQVLASSVPVKAIWAIPEDVQAAPKDKLVQL 123 Query: 121 AKLLGMSDAELRKKLDSDRNFVYLKRQVEQDIADKIVKLGIAGIETRKEYKRFYPEGEVM 180 AKLL MSDA+LRKKLDSDR+FVYLKRQVEQD ADKIVKLGI GIETRKEYKRFYPEGEVM Sbjct: 124 AKLLEMSDADLRKKLDSDRSFVYLKRQVEQDTADKIVKLGIPGIETRKEYKRFYPEGEVM 183 Query: 181 AHVVGFTNVEDAGQDGMELGSQKTLAGVTGSRRVIKDRLGRIVEDIEAVREPHDGKDLTL 240 AHVVGFTN+EDAGQDGMEL +QKTLAGVTGSRRVIKDRLGR+VEDIE++REPHDG+DLTL Sbjct: 184 AHVVGFTNIEDAGQDGMELAAQKTLAGVTGSRRVIKDRLGRVVEDIESIREPHDGRDLTL 243 Query: 241 SIDSKIQYIAFTQLKDAVEKNKAKAGGIIVVDARTGEVLALANLPTYNPNDRSVLTGAQL 300 SIDSKIQYIAFTQLK+AVEK KAKAGGIIVVDA+TGEVLALANLPTYNPNDRSVLTGAQL Sbjct: 244 SIDSKIQYIAFTQLKEAVEKFKAKAGGIIVVDAKTGEVLALANLPTYNPNDRSVLTGAQL 303 Query: 301 RNRVLTDTFEPGSTLKPFTVALALDTHRVTPSTVFQTSPGKMTIGTATIGDSHAHGPLTV 360 RNRV+TDTFEPGST+KPFTVALALDTHRVTPSTVFQT+PGKMTIGTATIGDSHAHGPLTV Sbjct: 304 RNRVVTDTFEPGSTMKPFTVALALDTHRVTPSTVFQTAPGKMTIGTATIGDSHAHGPLTV 363 Query: 361 AQIIEKSSNIGTAKIALEMPAQEMWEMFTNVGLGQQPKFGFPGAVAGRVRPYKAWRPIEQ 420 AQIIEKSSNIGTAKIAL MP +EMWEMFT VG GQQPKFGFPGAVAGRVRPYK+WRPIEQ Sbjct: 364 AQIIEKSSNIGTAKIALGMPPEEMWEMFTTVGFGQQPKFGFPGAVAGRVRPYKSWRPIEQ 423 Query: 421 ATMSYGHGISVSLIQLAHAYTIFARNGDLIPLSFTKVNDSPIGQRVISENTALQMRRMLE 480 ATMSYGHGISVSLIQLAHAY IFARNGD+IPLSFTKV DSPIGQRVIS +TALQMRRMLE Sbjct: 424 ATMSYGHGISVSLIQLAHAYLIFARNGDIIPLSFTKVTDSPIGQRVISADTALQMRRMLE 483 Query: 481 TVVAPGGTAPQAQVPGYRVGGKTGTAYKIEGGKYVKKYVSSFVGIAPMSDPRLIIAVMLD 540 TVVAPGGTAPQAQVPGYRVGGKTGTAYKIEGGKYV+KYV+SF GIAPMSDPRLII+VM+D Sbjct: 484 TVVAPGGTAPQAQVPGYRVGGKTGTAYKIEGGKYVRKYVASFSGIAPMSDPRLIISVMID 543 Query: 541 EPSAGSHFGGTVAGPVFANVTANALRALNVAPDSSVTNIIIPKDALEESM 590 EP G H+GG VAGPVFANV ANALRALNV PDSSVTNIIIPK+ LEESM Sbjct: 544 EPQ-GQHYGGPVAGPVFANVAANALRALNVPPDSSVTNIIIPKEPLEESM 592 >gi|300313947|ref|YP_003778039.1| cell division protein FtsI [Herbaspirillum seropedicae SmR1] Length = 656 Score = 120 bits (300), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 151/596 (25%), Positives = 235/596 (39%), Gaps = 104/596 (17%) Query: 45 AFLTLAGRALWLQGMSTDFLQKQGASRYARNSRLPATRGKITDRNGQVLASSVPVKAIWA 104 F L R LWLQ + D Q + RG I DRNG VLA + + Sbjct: 28 CFSLLLARFLWLQVVRHDAYAAQAEENRISVVPIVPNRGLILDRNGVVLARNYSAYTLEI 87 Query: 105 IPDDVQEAPRDKLRELAKLLGMSDAELRKKL---DSDRNFVYL---KRQVEQDIADKIV- 157 P ++ D + EL L+ + + R+ + +NF + R ++++A Sbjct: 88 TPSKIRTNIDDLIDELGTLVEIQPRDRRRFRRLQEESKNFESVPIRTRLTDEEVAKFTAQ 147 Query: 158 KLGIAGIETRKEYKRFYPEGEVMAHVVGF---------------------TNVEDAGQDG 196 + G+E + R YP G+ AHV+G+ + G++G Sbjct: 148 RYRFPGVEVQARLFRQYPYGKTAAHVIGYIGRISQRDAERIADSDDEANYNGTDYIGKEG 207 Query: 197 MELGSQKTLAGVTGSRRVIKDRLGRIVEDIEAVREPHD-GKDLTLSIDSKIQYIAFTQLK 255 +E + L G TG V GR V + R P GK+L LSID ++Q + Sbjct: 208 LEKSYESQLHGTTGYEEVEISASGRAVRSLS--RTPATPGKNLILSIDIELQKVVEEAFG 265 Query: 256 DAVEKNKAKAGGIIVVDARTGEVLALANLPTYNPN------------------DRSVLTG 297 D + G ++ ++ TG++LA + P+Y+PN DR +L Sbjct: 266 D-------QKGALVAINPATGDILAYVSQPSYDPNLFVEGIDQQSWDELNKSPDRPLL-- 316 Query: 298 AQLRNRVLTDTFEPGSTLKPFTVALALDTHRVTPSTVFQTSPGKMTIGTATIGDSH--AH 355 NR L+ + PGST KPF AL+ + P + PG +G D H Sbjct: 317 ----NRPLSGLYSPGSTYKPFMALAALELGKRRPQDAIR-DPGYFILGNHRFRDDKEGGH 371 Query: 356 GPLTVAQIIEKSSNIGTAKIALEMPAQEMWEMFTNVGLGQ-------QPKFG-FPGA--- 404 G + + + + S + +A +M + + G GQ K G P Sbjct: 372 GVVDMYRSVVVSCDTYYYMLANDMGVNAIHDFMKPFGFGQITGIDLEHEKRGILPSTEWK 431 Query: 405 -VAGRVRPYKAWRPIEQATMSYGHGI-SVSLIQLAHAYTIFARNGDLIPLSFTK-VNDSP 461 A R K W + ++ G G S + +QLA A I A NG ++ K V D Sbjct: 432 RTAFRKPEQKRWIAGDTVSLGIGQGYNSFTPLQLAQATAILANNGVVMKPHLVKIVEDGV 491 Query: 462 IGQR---VISENTALQM--------RRMLETVVAPGGTAPQAQVPGYRVGGKTGTAYKI- 509 +R V E+ + M +R + VV G A + Y GGKTGTA + Sbjct: 492 THERTETVPKESYRIPMKQENIDFIKRAMVGVVKEGTGAAAFRGAPYESGGKTGTAQVVN 551 Query: 510 --EGGKYVKKYVSS-------FVGIAPMSDPRLIIAVMLDEPSAGSHFGGTVAGPV 556 + KY K +S ++G AP PR+ IA +++ +G VA P+ Sbjct: 552 IAKNQKYDSKKLSRIYHDNGLYIGFAPADAPRIAIAAVVE----NGGWGAGVAAPL 603 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,865,526 Number of extensions: 81024 Number of successful extensions: 274 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 270 Number of HSP's successfully gapped: 2 Length of query: 590 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 499 Effective length of database: 1,188,985 Effective search space: 593303515 Effective search space used: 593303515 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)