BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0034.p
         (389 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309675|ref|YP_003773767.1| UDP-N-acetylmuramyl pentapeptid...   716   0.0  

>gi|300309675|ref|YP_003773767.1| UDP-N-acetylmuramyl pentapeptide
           phosphotransferase/UDP-N- acetylglucosamine-1-phosphate
           transferase [Herbaspirillum seropedicae SmR1]
          Length = 389

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/389 (93%), Positives = 379/389 (97%)

Query: 1   MLLWLAQNFQQDFSFLRVFNFITFRAVFATLTALLIGLVAGPAVIRMLTLLKVGQAVRTD 60
           ML+WLAQNFQQDF FLR+FNFITFRAVFATLTALLIG++AGPAVIRMLT +KVGQAVRTD
Sbjct: 1   MLVWLAQNFQQDFGFLRLFNFITFRAVFATLTALLIGMIAGPAVIRMLTRMKVGQAVRTD 60

Query: 61  GPQTHLIKSGTPTMGGVLILIGIGISTLLWADLSNRFVWIVLIVTLGFGTVGWVDDYRKV 120
           GPQTHLIKSGTPTMGGVLILIGIGISTLLWADLSNRFVWIVLIVTLGFG +GWVDDYRKV
Sbjct: 61  GPQTHLIKSGTPTMGGVLILIGIGISTLLWADLSNRFVWIVLIVTLGFGAIGWVDDYRKV 120

Query: 121 VYKDPNGMRSREKYFWQSLIGLVAAFYLAFSVSEVSNMKVLDLFFAWVQSGFNLDLPPKA 180
           VY+DP GMRSREKYFWQSLIGLVAAFYLAFSVSEVSNMKV DLF AWV+SGF+LDLPPKA
Sbjct: 121 VYRDPQGMRSREKYFWQSLIGLVAAFYLAFSVSEVSNMKVFDLFVAWVRSGFSLDLPPKA 180

Query: 181 DLIVPFFKTVSYPLGVWGFIALTYFVIVGTSNAVNLTDGLDGLAIMPTVLVGGALGIFAY 240
           DLIVPFFKTVSYPLGVWGFIALTYFVIVGTSNAVNLTDGLDGLAIMPTVLVG ALG+FAY
Sbjct: 181 DLIVPFFKTVSYPLGVWGFIALTYFVIVGTSNAVNLTDGLDGLAIMPTVLVGAALGLFAY 240

Query: 241 LTGSASYAKYLFIPHIPGAGELLIFCGAMAGAGLAFLWYNAYPAQVFMGDVGALALGGAL 300
           LTG+A+YAKYLFIPHIPGAGELLIFCGAM GAGLAFLWYNAYPAQVFMGDVGALALGGAL
Sbjct: 241 LTGNAAYAKYLFIPHIPGAGELLIFCGAMGGAGLAFLWYNAYPAQVFMGDVGALALGGAL 300

Query: 301 GTIAVIVRQEIVLFIMGGIFVVETLSVMIQVAYFKFTKKRYGVGKRVLLMAPLHHHYEQK 360
           GTIAVIVRQEIVLFIMGGIFVVETLSVMIQVAYFK+TKKR+G G+RVLLMAPLHHHYEQK
Sbjct: 301 GTIAVIVRQEIVLFIMGGIFVVETLSVMIQVAYFKYTKKRFGTGRRVLLMAPLHHHYEQK 360

Query: 361 GWKETQVVVRFWIITMMLVLFGLSTLKLR 389
           GWKETQVVVRFWIITMMLVL GLSTLKLR
Sbjct: 361 GWKETQVVVRFWIITMMLVLLGLSTLKLR 389


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.145    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,146,988
Number of extensions: 45601
Number of successful extensions: 189
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 302
Effective length of database: 1,207,925
Effective search space: 364793350
Effective search space used: 364793350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)