BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0030.p
         (421 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309677|ref|YP_003773769.1| rod shape-determining (RodA pro...   653   0.0  
gi|300313948|ref|YP_003778040.1| rod shape-determining (RodA pro...   113   3e-26

>gi|300309677|ref|YP_003773769.1| rod shape-determining (RodA
           protein) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 421

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/421 (84%), Positives = 375/421 (89%)

Query: 1   MKLTLPSITGWFGAKDEPGVRGNARSGSNSGSLKGISGIEQRSRMMEYDQPLVWVVLLLM 60
           MKL L S+  W G   E       R+ S  G   G  G EQRSRMMEYDQPL+WVVLLLM
Sbjct: 1   MKLNLSSMRSWLGGLREAAPAAAGRARSGRGGASGSIGFEQRSRMMEYDQPLIWVVLLLM 60

Query: 61  LFGMVMVYSASIALPDSPKYANYKTAHFLIRQAMFIGVSLLAGLLVFRIKIETWQKLAPY 120
           LFGMVMVYSAS+ALPDSPKYA+Y   HFLIRQA+FI +S++AG L FR++IETWQK APY
Sbjct: 61  LFGMVMVYSASVALPDSPKYASYSNYHFLIRQAIFIVLSIIAGALAFRVRIETWQKWAPY 120

Query: 121 LFVGTLILLAMVLIPGIGKGVNGAKRWLSFKVFNLQPSELMKLFIVLYAADYTVRKQEVM 180
           LF  TLILL MVL+PG+GKGVNGAKRWLS K+ NLQPSELMKLFIVLYAADYTVRKQ VM
Sbjct: 121 LFGITLILLLMVLVPGVGKGVNGAKRWLSLKIINLQPSELMKLFIVLYAADYTVRKQAVM 180

Query: 181 HKLTKGFMPMTLAVGVVGLLLLLEPDLGAFGVIVCIAMGILFLGGINGVWFGGIGATLVG 240
           HKL KGF PM  AVG+VGLLLLLEPDLGAFGVIVCIAMGILFLGGINGVWFGGIGATLVG
Sbjct: 181 HKLVKGFFPMAAAVGLVGLLLLLEPDLGAFGVIVCIAMGILFLGGINGVWFGGIGATLVG 240

Query: 241 IFSLVIVLSPWRRERIFAYMNPWVEENALGKAYQLSHSLIAFGRGELFGVGLGGSVEKLH 300
           +FSLVIV SPWRRERIFAY+NPW EENALGKAYQLSHSLIAFGRGELFGVGLG SVEKLH
Sbjct: 241 VFSLVIVTSPWRRERIFAYLNPWEEENALGKAYQLSHSLIAFGRGELFGVGLGSSVEKLH 300

Query: 301 YLPEAHTDFLLAVIGEELGFAGVLVVVLLFYWLIKHAFEIGRQAIALDLTFAGLVAKGIG 360
           YLPEAHTDFLLAVIGEELGF GVLVVVLLFYWL+KHAFEIGRQAIALDLTFAGLVAKGIG
Sbjct: 301 YLPEAHTDFLLAVIGEELGFVGVLVVVLLFYWLVKHAFEIGRQAIALDLTFAGLVAKGIG 360

Query: 361 IWIGVQTFINMGVNLGLLPTKGLTLPLMSYGGSGVLINCVGLAILLRIDYENRMLMRGGR 420
           IW+GVQ FINMGVNLGLLPTKGLTLPLMSYGGSGVL+NCVGLAILLRIDYENR+LMRGGR
Sbjct: 361 IWLGVQAFINMGVNLGLLPTKGLTLPLMSYGGSGVLLNCVGLAILLRIDYENRVLMRGGR 420

Query: 421 L 421
           L
Sbjct: 421 L 421


>gi|300313948|ref|YP_003778040.1| rod shape-determining (RodA
           protein) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 369

 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 188/380 (49%), Gaps = 31/380 (8%)

Query: 42  RSRMMEYDQPLVWVVLLLMLFGMVMVYSASIALPD--SPKYANYKTAHFLIRQAMFIGVS 99
           +  +  +D  L  +V L++  G+V +YSA +  P     +  N   A  ++  A  +   
Sbjct: 13  KPHLTVFDGALSLIVFLILSVGIVTLYSAGMNFPGRVEDQLRNILVAFVVMWIAANVSPQ 72

Query: 100 LLAGLLVFRIKIETWQKLAPYLFVGTLILLAMVLIPGIGKGVNGAKRWLSFKVFNLQPSE 159
           LL  L V            P   VG  +L+A+ L   I KG   ++RWL+  +  +QPSE
Sbjct: 73  LLLRLAV------------PVYTVGVTLLIAVALFGIIKKG---SRRWLNIGMV-VQPSE 116

Query: 160 LMKLFIVLYAADYTVRKQEVMHKLTKGFMPMTLAVGVVGLLLLLEPDLGAFGVIVCIAMG 219
           +MK+ + L  A Y  +K+E M +    F+   + + + G L++ +PDLG   +++     
Sbjct: 117 IMKIAMPLMLAWY-FQKREGMLRW-DAFVVAAILLLIPGFLIIRQPDLGTGLLVLAAGFY 174

Query: 220 ILFLGGINGVWFGGIGATLVGIFSLVIVLS---PWRRERIFAYMNPWVEENALGKAYQLS 276
           ++F  G+   W    G  + G  SL +V S    ++R+R+   ++P    + LGK + + 
Sbjct: 175 VIFFAGLP--WKILAGLFVAGAASLPVVWSFMHDYQRQRVMMLIDP--TSDPLGKGFHII 230

Query: 277 HSLIAFGRGELFGVG-LGGSVEKLHYLPEAHTDFLLAVIGEELGFAGVLVVVLLFYWLIK 335
            S IA G G + G G L G+   L ++PE  TDF+ +V  EE G  G +V+++L+  LI 
Sbjct: 231 QSTIAIGSGGVTGKGWLMGTQTHLEFIPERTTDFIFSVYSEEFGLIGNIVLLVLYLLLIG 290

Query: 336 HAFEIGRQAIALDLTFAGLVAKGIGIWIGVQTFINMGVNLGLLPTKGLTLPLMSYGGSGV 395
               I   A  L   F  L+   I +      F+NMG+  G+LP  G+ LP MSYGG+ +
Sbjct: 291 RGLMITANAPTL---FTRLLGGAITMIFFTYAFVNMGMVSGILPVVGVPLPFMSYGGTAL 347

Query: 396 LINCVGLAILLRIDYENRML 415
           +   +G  IL+ I    +++
Sbjct: 348 VTLGLGAGILMSIQRHRKLV 367


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.145    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 999,463
Number of extensions: 32600
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 2
Length of query: 421
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 333
Effective length of database: 1,203,190
Effective search space: 400662270
Effective search space used: 400662270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)