BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0029.p
         (317 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309678|ref|YP_003773770.1| UDP-N-acetylglucosamine-N-acety...   516   e-147

>gi|300309678|ref|YP_003773770.1|
           UDP-N-acetylglucosamine-N-acetylmuramyl-pentapeptide
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase [Herbaspirillum seropedicae SmR1]
          Length = 360

 Score =  516 bits (1328), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 257/315 (81%), Positives = 283/315 (89%)

Query: 1   MERDLVPKHGVEMDSIVFAGLRGKGLAHTVKGVWRMIASFGACYGIIGKRRPDVVLGMGG 60
           MER+LVP HGVEMDSIVFAGLRGKGL HTVKG WR++ASF  C+ I+G+RRPDVVLGMGG
Sbjct: 44  MERELVPCHGVEMDSIVFAGLRGKGLMHTVKGAWRLVASFFDCFAILGRRRPDVVLGMGG 103

Query: 61  YVTVPGGAMARLRGVPLALVNADAALLLSNKMLTPLADKVLFGFPADFGKAAAKAEVTGN 120
           YVTVPGGAMARLRG PL LVNADAALLLSNK LTPLADKVLFGFPADFGKAA KAEVTGN
Sbjct: 104 YVTVPGGAMARLRGKPLVLVNADAALLLSNKALTPLADKVLFGFPADFGKAAGKAEVTGN 163

Query: 121 PVRKEILALPLPATRYAGHDGPLRILVVGGSLGAKVLNECVPAALAKLPPDQRPLVTHQS 180
           PVR+EI ALP P  RYAG  GPL+ILVVGGSLGAKVLNE VPAALA+LP +QRP VTHQS
Sbjct: 164 PVRQEITALPPPVQRYAGRRGPLKILVVGGSLGAKVLNETVPAALAQLPLEQRPQVTHQS 223

Query: 181 GKQHIDALRAAYAQAGVEAEVVDFIDDMPRRYADADLVICRAGAITVSELTAAGVASVLV 240
           GKQ+I ALRAAY  AGVEAEV+DFI+DMPRRYA+ADLVICRAGAITVSELTAAGVASVLV
Sbjct: 224 GKQNIVALRAAYEAAGVEAEVLDFIEDMPRRYAEADLVICRAGAITVSELTAAGVASVLV 283

Query: 241 PLVASTTSHQRDNATWMAQNKAAVHLPQTEMTPDSLAALLQEMNRPACLQMALAAYEQGR 300
           PLV STTS Q +NA WMA+NKAA+HLPQ E++PD+LA LLQ+++R AC +MA AAYEQGR
Sbjct: 284 PLVVSTTSQQIENARWMAKNKAAIHLPQRELSPDALAGLLQKLDRAACHEMAQAAYEQGR 343

Query: 301 RNANEAIAQVLERLV 315
           R+ANEAIA+VLE LV
Sbjct: 344 RDANEAIARVLEGLV 358


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,050,010
Number of extensions: 46097
Number of successful extensions: 184
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,217,395
Effective search space: 282435640
Effective search space used: 282435640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)